Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01508 ATGGATAAAAAACAGTGCAATACGTCTCAAGATCCTGAAGTGAGAAAAGGGCCATGGACAATGGAAGAAGATTTGATCTTGATCAACTATATTTCGAATCATGGGGAAGGTGTCTGGAACTCTTTGGCCAAAGCTGCTGGTCTTAAACGTACTGGAAAGAGTTGCCGGCTTAGGTGGCTAAACTACCTCCGTCCTGATGTTAGAAGAGGGAATATTACACCCGAGGAACAACTTTTGATCATGGAGCTTCACGCAAAGTGGGGAAACAGGTGGTCAAAAATTGCCAAGCATCTACCAGGAAGGACTGATAATGAGATAAAAAACTACTGGAGGACCAGGATCCAGAAGCACATCAAGCAAGCTGAGAACTTTCAGCAACAGAGTAATTCTAATTCTGAGATAAATGATCATCAAGCTAGCACTAGCCAAGTGTCCACCATGGCTGAGCCCATGGAGACCTACTCTTCACCCTGTTACCAAGGAATGTTAGAGCCATTTTCAACTCAGTTTCCCAATATTCCTGATCAATCCAGTTGTTGTACCAATGACAACAACAATTATTGGAGCATGGAGGATATCTGGTCAATGCAGTTACTGAACGGGGATTAA 609 0.4319 MDKKQCNTSQDPEVRKGPWTMEEDLILINYISNHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKHLPGRTDNEIKNYWRTRIQKHIKQAENFQQQSNSNSEINDHQASTSQVSTMAEPMETYSSPCYQGMLEPFSTQFPNIPDQSSCCTNDNNNYWSMEDIWSMQLLNGD 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01508 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Phco3g01508 202 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 11 140 IPR044676 GO:0003700|GO:0006355|GO:0043565
Phco3g01508 202 Gene3D - 73 144 - -
Phco3g01508 202 FunFam Myb-related protein 305 73 144 - -
Phco3g01508 202 CDD SANT 73 112 IPR001005 -
Phco3g01508 202 SMART sant 68 116 IPR001005 -
Phco3g01508 202 SMART sant 15 65 IPR001005 -
Phco3g01508 202 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Phco3g01508 202 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Phco3g01508 202 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Phco3g01508 202 CDD SANT 18 63 IPR001005 -
Phco3g01508 202 Gene3D - 16 68 - -
Phco3g01508 202 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Phco3g01508 202 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Phco3g01508 202 FunFam Myb transcription factor 16 68 - -
Phco3g01508 202 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01508 Phco-Chr3 17598900 17602199 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g01508 Myb_DNA-binding 1.2e-14 CL0123