Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01504 ATGGACAAGAAACTATCTACTATGTCTCATGATCCTGAGGTCAGAAAGGGACCATGGACAATGGAAGAAGACTTAATCTTGATCAACTACATCGCAAATCATGGGGAAGGTGTTTGGAACTCTTTGGCCAAAGCTGCAGGTCTTAAACGTACCGGAAAAAGCTGCCGGCTCCGGTGGCTAAACTACCTCCGTCCCGATGTTAGAAGAGGGAATATTACACCCGAGGAACAGCTCTTGATCATGGAACTTCATGCAAAGTGGGGAAACAGGTGGTCCAAAATTGCAAAGCAACTACCCGGAAGGACTGATAATGAGATCAAGAACTTCTGGAGGACAAGAATCCAGAAGCACATGAAGCAAACTGAGAGCTTTCAGCAACAGAGTAATTCTGAGACAAACGATCGCCAAGCTTGCACTAGCCAAGTGTCCAACATTGCTGAGCCCATGGAGACCTATTCTCCATCCTGTTATCAAGGAATGTTAGAACCATTTTCAGCTCAGTTCCACACAAATCCTGATCATTCCAGTAGTTGTACAAATGACAACACCAACTATTGGAGCATGGAGGATATCTTATCAATGCAGTTAGCCAATTACTAA 600 0.4433 MDKKLSTMSHDPEVRKGPWTMEEDLILINYIANHGEGVWNSLAKAAGLKRTGKSCRLRWLNYLRPDVRRGNITPEEQLLIMELHAKWGNRWSKIAKQLPGRTDNEIKNFWRTRIQKHMKQTESFQQQSNSETNDRQACTSQVSNIAEPMETYSPSCYQGMLEPFSAQFHTNPDHSSSCTNDNTNYWSMEDILSMQLANY 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01504 199 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Phco3g01504 199 Gene3D - 16 68 - -
Phco3g01504 199 Gene3D - 73 143 - -
Phco3g01504 199 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Phco3g01504 199 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Phco3g01504 199 SUPERFAMILY Homeodomain-like 13 110 IPR009057 -
Phco3g01504 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Phco3g01504 199 SMART sant 68 116 IPR001005 -
Phco3g01504 199 SMART sant 15 65 IPR001005 -
Phco3g01504 199 CDD SANT 73 112 IPR001005 -
Phco3g01504 199 MobiDBLite consensus disorder prediction 120 139 - -
Phco3g01504 199 FunFam Myb-related protein 305 73 142 - -
Phco3g01504 199 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Phco3g01504 199 CDD SANT 18 63 IPR001005 -
Phco3g01504 199 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Phco3g01504 199 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 9 153 IPR044676 GO:0003700|GO:0006355|GO:0043565
Phco3g01504 199 FunFam Myb transcription factor 16 68 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01504 Phco-Chr3 17430346 17435036 Proximal
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g01504 Myb_DNA-binding 6.5e-15 CL0123