Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01501 ATGGAGTTTAGTCCAAGTTTCCCTGAGAAAATTCACTACCTTTCTGGGATTTTCCCTGAAATCAAATCAGAGATTCCTGTGTCAGAAGAGAACACCAGCTTCATGTATCAAAACAATTTCAACCATTTCCAGCACCACCATCATCACCTGAATGAGCCAAACCACGGCCACCCTGAAAGTTTTTTCACAGAGGGTCCTTCCTCCATCATCAACCCATTATTCTCTTTATCCTCAGCAAACCATTCTTCAGGTGGTCCATCTTCCTACAAACCGACTTATCCCAATGAATCCCTCAAAAGAGGCTATGCCAACCCCTACTACCCCATGCCTTATGCACCAAACAACACCAATGTTGAATCCATGCAGGGTCACCCCAACAAGGTCATCTGGGACTTTTCCCAGAAAGTTCCCCTTCACTCTGGCCCAAGTGCAACTTCAGATCCTCAGGTGCAGAGGAAGACTAATGGCCAAATTCAAAACAGGATGACCAACATAGTCAAAGGCCAGTGGAGTGCTGAGGAGGACAGCGTCCTCGTCCAATTGGTGAAACGCTTTGGGATAAAAAAATGGTCCCATATCGCCAGGTTGCTGAATGGCAGGGTTGGGAAACAGTGCAGAGAGAGGTGGCACAATCATCTCCGGCCAAACATTAGGAAGGAGTCATGGAGCGAAGAGGAGGACAAAATCCTGATTGAAGCTCACAAGGAACTCGGGAACAAATGGGCAGAGATTGCAAGGAGAATGCCGGGAAGGACTGAAAACACCATCAAGAACCACTGGAACGCCACCAAGCGTCGCCAGAAGGCCAAGAGGCAGAGGAACAAGCGCAGGAGCTCCAAGGGTGCACCCACGCTTCTCGAGAGTTACATAAGGAAAGTCACTGCGGCGGAAGAGTCTGAGAAGGAATTGAAGAACTCTATGAGCAAGATGAACTTGAATGAGACCACCAATGCGGGTCTCTTTCGGGTTCGGTACGAGAGCTCCGAAGGTGACTTCAGCTCGGAGGAGGACGAGCTTGGGTGGAGCCTGCAGCACCACGTGCCATGTGGTGGTGATGGTGGCTATGTGCCACTGATGGTGAACGCTGGGGAAGAGAGCCTGATTGATTACGAGGTTGCCTTGCAGATGGCACCGGAGGTCCAGATGAGGAAGGAGATGGATCTCATGGAGATGATCTATAGAAAAGACATCATTCAAACTGTGGTTTTTCTTCGGTTGGGTTTGTTGCATGCCGTGGATATTTTAGTTCCTTTGTTTTCGTCTTATGATTTTCGGTTCAAATGTGGTTTTGGTGGGGCGTTTGTTTTGCTTCTGTTTCGGCTGTAA 1326 0.4872 MEFSPSFPEKIHYLSGIFPEIKSEIPVSEENTSFMYQNNFNHFQHHHHHLNEPNHGHPESFFTEGPSSIINPLFSLSSANHSSGGPSSYKPTYPNESLKRGYANPYYPMPYAPNNTNVESMQGHPNKVIWDFSQKVPLHSGPSATSDPQVQRKTNGQIQNRMTNIVKGQWSAEEDSVLVQLVKRFGIKKWSHIARLLNGRVGKQCRERWHNHLRPNIRKESWSEEEDKILIEAHKELGNKWAEIARRMPGRTENTIKNHWNATKRRQKAKRQRNKRRSSKGAPTLLESYIRKVTAAEESEKELKNSMSKMNLNETTNAGLFRVRYESSEGDFSSEEDELGWSLQHHVPCGGDGGYVPLMVNAGEESLIDYEVALQMAPEVQMRKEMDLMEMIYRKDIIQTVVFLRLGLLHAVDILVPLFSSYDFRFKCGFGGAFVLLLFRL 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01501 441 MobiDBLite consensus disorder prediction 262 283 - -
Phco3g01501 441 Coils Coil 286 306 - -
Phco3g01501 441 MobiDBLite consensus disorder prediction 262 278 - -
Phco3g01501 441 SMART sant 218 266 IPR001005 -
Phco3g01501 441 SMART sant 166 215 IPR001005 -
Phco3g01501 441 FunFam Transcriptional activator Myb isoform A 166 219 - -
Phco3g01501 441 Pfam Myb-like DNA-binding domain 170 227 - -
Phco3g01501 441 CDD SANT 170 213 IPR001005 -
Phco3g01501 441 Gene3D - 220 284 - -
Phco3g01501 441 ProSiteProfiles Myb-like domain profile. 162 213 IPR001005 -
Phco3g01501 441 SUPERFAMILY Homeodomain-like 164 260 IPR009057 -
Phco3g01501 441 ProSiteProfiles Myb-like domain profile. 214 264 IPR001005 -
Phco3g01501 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 214 268 IPR017930 -
Phco3g01501 441 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 162 213 IPR017930 -
Phco3g01501 441 PANTHER MYB PROTEIN-RELATED 146 281 - -
Phco3g01501 441 CDD SANT 221 264 IPR001005 -
Phco3g01501 441 Gene3D - 166 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01501 Phco-Chr3 17212675 17217227 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g01501 Myb_DNA-bind_6 1.2e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01501 3 17212675 17217227 Phco3g01501 3 17212675 17217227 ECH