Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01496 ATGCTGTGCTGTTCACACAGCAGATCTAGAAACAATCACGCTTCTAGTAGGCCACTCCACGAATATGGGACAAACAGCAATAAAGCAACAATAAATTTTGAAGTTGCCAATTCAGACCCAGAAATGAACACCAAAAGCATCACCTCAAATCCAAGCCACCACAACAACCCATCACCATGGATTCTCTTCACTACACTTTTTCTCTCGTCTTTCTCCCTCTCACTCTCCGATCCAAGAATCACCGAAGCAGGACTCTACTGTGGAACCACCAAGGCCCCTCTGAAAGCCAACTACATCCCAAGTTTCACCAAGGAAATGGAGAGCCTCTCGCAGTTGGTGACCAACCACAACTGGGGCACTCACGTTGTCAACGTTTCAGGCTCCTCCATTCCAATTTATGGCTTTGCACAATGCTTCAAGGACCTCTCCAACACCGATTGCCTTCTCTGCTACGCTGCAAGCCGTACCAAGCTTCCACGCTGCCTACCTTCTGTCTCTGCGCGCATCTACCTTGATGGCTGCTTCTTGCGGTATGACAACTACAGCTTCTATGCGGAGAGCAGTGACCCTTTGAGGGATACAGTGAACTGCACCTCACAGCATGGGACGGTTGTTGATAAGACTGAGAGATTGGAACTTGAGGAGAGCGTTGGAAGGGTAGTTGAGAGTGTGACCAACAGGGCTCTGGCAAAAGGTGGTGGCTTTGCTGTGGGAGAGGTTGAGGGGGTTTATGCATTGGCACAGTGCTGGAATACCATTGGGAGTGATGGGTGTAGAGAGTGTCTGAGGAAAGCTGGGAAGGAGGTGAGAGGGTGCTTGCCAAAGAGGGATGGGAGGGCCCTGAATGCTGGCTGTTATTTGAGGTATTCAACAAATAAGTTCTACAATGAAGATGGCGATGCAGGTGGTAAAAATGGATTCTTAAGAAGAGGAGTCATAATCGCAGAAGTGTTAGCAGCAGCTGCAGTTTTAATGCTTACTCTCTCTGCCTCCTATGTAGCCTTCACAAAATTAACTAGGATAAAAAAAGAAAACAATAATCTTGGTCAGATTTCCTCTTCCACAAGCAAATCTAGCTTGAATTACAAGTACGAAACTCTTGAGAAGGCCACAGATTATTTTAACTCTTCACGGAAAATAGGCCAAGGTGGAGCTGGCTCAGTTTTCAAAGGTATTCTCCCAAATAAGAAAGTTATTGCGGTTAAGAGATTGATCTTCAATAACAGGCAATGGGTGGATGAGTTCTTCAACGAAGTGAATTTGATTAGCGGAATTGAACACAAGAACCTTGTCAAACTATTGGGATGTAGCATTGAAGGCCCTGAGAGCCTCCTTGTGTATGAGTACTTGCCCAAAAAGAGTTTAGACCAATTTATCTTCGAAAAAAACAGAACTCAGATTCTAAACTGGAAGCAGAGGTTTAATATCATTCTTGGAACTGCAGAGGGGCTAGCATATCTTCATGAAGGTACCAAAATAAGAATCATCCATCGAGATATCAAAAGCAGCAATGTTCTCCTGGACGAGAATCTCTCTCCGAAGATTGCAGATTTCGGCCTTGCCCGGTGTTTCGGAGCTGATAAGTCCCATTTGAGCACTGGAATTGCTGGAACACTAGGTTACATGGCTCCTGAGTACCTAATCAGAGGACAACTTACTGATAAAGCTGATGTGTATAGTTTTGGAGTACTTGTTCTAGAGGTTGTATGTGGGAGGAGGAATAATGTCTTCCGAGAGGACTCTGGCTCGCTTCTACAAACTGTTTGGAAACTTTACCGATCAAACACATTAACTGAAGCTGTTGATCCTTGCTTGGGAGATGATTATCCTGCAACTGAAGCATCAAGGGTGTTTCAAATTGGATTGCTTTGCACACAAGCTTCTGCCTCCCTTAGACCATCCATTTCTCAAGTTGTTTACATGCTAATTAATTCAAATGAAGACGTTCCCACTCCAAATCAGCCCCCATTTTTGAACACTGGAATGCTGGACTCAGATGGTTCCATTAAGTCTTATAGCACTAACAGCTTCATATCCAATGCCTTGAAGAAGATTGGAGTATCCTACATCTACTCAGAGTCCTCTAGTTCACGCACCTCAGATGGGCCATCAAGAAGTGAAGAATCAATTGTTCAAGTTTGA 2142 0.4458 MLCCSHSRSRNNHASSRPLHEYGTNSNKATINFEVANSDPEMNTKSITSNPSHHNNPSPWILFTTLFLSSFSLSLSDPRITEAGLYCGTTKAPLKANYIPSFTKEMESLSQLVTNHNWGTHVVNVSGSSIPIYGFAQCFKDLSNTDCLLCYAASRTKLPRCLPSVSARIYLDGCFLRYDNYSFYAESSDPLRDTVNCTSQHGTVVDKTERLELEESVGRVVESVTNRALAKGGGFAVGEVEGVYALAQCWNTIGSDGCRECLRKAGKEVRGCLPKRDGRALNAGCYLRYSTNKFYNEDGDAGGKNGFLRRGVIIAEVLAAAAVLMLTLSASYVAFTKLTRIKKENNNLGQISSSTSKSSLNYKYETLEKATDYFNSSRKIGQGGAGSVFKGILPNKKVIAVKRLIFNNRQWVDEFFNEVNLISGIEHKNLVKLLGCSIEGPESLLVYEYLPKKSLDQFIFEKNRTQILNWKQRFNIILGTAEGLAYLHEGTKIRIIHRDIKSSNVLLDENLSPKIADFGLARCFGADKSHLSTGIAGTLGYMAPEYLIRGQLTDKADVYSFGVLVLEVVCGRRNNVFREDSGSLLQTVWKLYRSNTLTEAVDPCLGDDYPATEASRVFQIGLLCTQASASLRPSISQVVYMLINSNEDVPTPNQPPFLNTGMLDSDGSIKSYSTNSFISNALKKIGVSYIYSESSSSRTSDGPSRSEESIVQV 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01496 713 FunFam Cysteine-rich receptor-like protein kinase 2 340 449 - -
Phco3g01496 713 SMART serkin_6 374 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01496 713 ProSitePatterns Serine/Threonine protein kinases active-site signature. 495 507 IPR008271 GO:0004672|GO:0006468
Phco3g01496 713 SUPERFAMILY Protein kinase-like (PK-like) 357 664 IPR011009 -
Phco3g01496 713 MobiDBLite consensus disorder prediction 1 23 - -
Phco3g01496 713 Pfam Protein kinase domain 375 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01496 713 Gene3D Transferase(Phosphotransferase) domain 1 450 653 - -
Phco3g01496 713 ProSiteProfiles Gnk2-homologous domain profile. 192 294 IPR002902 -
Phco3g01496 713 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 133 671 - -
Phco3g01496 713 Gene3D Phosphorylase Kinase; domain 1 333 449 - -
Phco3g01496 713 FunFam Cysteine-rich receptor-like protein kinase 2 450 650 - -
Phco3g01496 713 CDD STKc_IRAK 380 642 - -
Phco3g01496 713 ProSiteProfiles Gnk2-homologous domain profile. 80 183 IPR002902 -
Phco3g01496 713 MobiDBLite consensus disorder prediction 694 713 - -
Phco3g01496 713 FunFam Cysteine-rich receptor-like protein kinase 3 195 294 - -
Phco3g01496 713 FunFam Cysteine-rich receptor-like protein kinase 2 80 183 - -
Phco3g01496 713 Gene3D - 195 294 IPR038408 -
Phco3g01496 713 Gene3D - 82 183 IPR038408 -
Phco3g01496 713 ProSiteProfiles Protein kinase domain profile. 374 658 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01496 713 Pfam Salt stress response/antifungal 97 181 IPR002902 -
Phco3g01496 713 Pfam Salt stress response/antifungal 212 291 IPR002902 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01496 Phco-Chr3 17102650 17106392 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Phco3g01496 Pkinase 1.4e-43 CL0016