Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01488 ATGGAGTTCGGGGGGAACATCTTCTGCCTCGCCAACAGAGACCAAAATGGAAATACTAACGGTAACACTTTCGCTTGGGATTCATGGCAAACAACCACTTTTAATAATAACAACAACACCTCCAGGTTGGTCAACGCTTTCAACGCCCCCGTCACTGGGGTCACCGCGCCGGAGAGCTCAGCAGCAAACCGCCCCGAGGCCGCCGGACTGGCCAGCGCTCTTATGTTCCTCCCTCAAAACGGAGGCGTTTCGCGTCACCGCCAGCACCAGCATCCGTACGGTGGGGATGGGTCCCACGTGCACCCCGACCCACACCTCATGTGCTTGAAGCTTGGGAAGAGGCATTACTTTGAGGACGCTAGTGGAAGTGGAACCGTTTCTTCTTCTTCTTCTTCTGCTGCTGCTTCTACTGCGGCTACTTTTGGCGGGGGGTTGGTGTTAGGGGATAAGAGAGGGAAAGGAGGGTATTCCGGCGGCGGTGCGGCGGTGAAAACTGTGGGGTTGACGACAGCGACGGTGCCGAGGTGTCAGGTGGAAGGGTGCCAGGTGGCGCTGGTGAACGCCAAGGACTACCACCGGAGGCACAAGGTGTGTGAGATGCACTCGAAGGCTCCCAAAGTTGTGGTCTTAGGGTTGGAGCAGAGGTTCTGTCAGCAGTGTAGCAGGTTTCACGTGGTGTCAGAGTTTGATGATTCAAAGAGAAGTTGTAGGAGGAGACTAGCAGGTCACAATGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTGCAAGGAATTCTTCACAAGGAGGGTGTGCTCTCTCTCTTCTGTCATCTAGAAGTGATTCTTGGCTTTCTCCTTCTGATCTCTCCACAAGATGCAGTGCTGCATTGCGTGAGTTGATAGCAGAAAACCGGGCAGCCATCATGGCAAGACAGTTTGTATCAGATAGAGATTGGCATATTCAGCACCATGCTGTGGAAGACATGAAGGAGATCCAACCTGAGTCCACTTACTTCCCACAACAGATGTTTCCCCAGACACAGTGA 1026 0.5322 MEFGGNIFCLANRDQNGNTNGNTFAWDSWQTTTFNNNNNTSRLVNAFNAPVTGVTAPESSAANRPEAAGLASALMFLPQNGGVSRHRQHQHPYGGDGSHVHPDPHLMCLKLGKRHYFEDASGSGTVSSSSSSAAASTAATFGGGLVLGDKRGKGGYSGGGAAVKTVGLTTATVPRCQVEGCQVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVARNSSQGGCALSLLSSRSDSWLSPSDLSTRCSAALRELIAENRAAIMARQFVSDRDWHIQHHAVEDMKEIQPESTYFPQQMFPQTQ 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01488 341 ProSiteProfiles Zinc finger SBP-type profile. 173 250 IPR004333 GO:0003677
Phco3g01488 341 FunFam Squamosa promoter-binding-like protein 14 168 237 - -
Phco3g01488 341 MobiDBLite consensus disorder prediction 240 261 - -
Phco3g01488 341 Pfam SBP domain 176 249 IPR004333 GO:0003677
Phco3g01488 341 SUPERFAMILY SBT domain 174 255 IPR036893 GO:0003677|GO:0005634
Phco3g01488 341 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 125 285 IPR044817 GO:0003677
Phco3g01488 341 Gene3D - 168 237 IPR036893 GO:0003677|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01488 Phco-Chr3 16707424 16712897 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco3g01488 SBP 6.3e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01488 3 16707424 16712897 Phco3g01488 3 16707424 16712897 ECH