Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01487 ATGTTGGATTACGAATGGAACACATCAATGATACTACTCGCCGGAAATGAAGGCGCTGGCGGCGAACCCGACCAAACGCGCCGGCAAATCTTCGACCACAACTTCGCCATGTTAACTGACCCCATTCTACATGGCTCAACACCAACAGCCACCACTGGTTTCTCACATCACCACCCCTTCAACCCACCACAACACCACCACCACCACCAGCAGCAGGCCTTCTTGGACCCACGCGCCTTCCAAAGCGCGTCCACCACTTCCTTCTCGCCACCACCTTCGGTGCTCTCACTTAACCCAATCCCACCTTTAGCCCCCTCCCACTGTGGGCTTGGAACTAGCTCCGGGCTTGGATTTCTGCTCATGTCCAAGTCTGAGGATGTGACTTCGCCCATGAACTTCGACGGCTCTAGTCATGGTCTCGGGCCTGGGCCTGGACCCGGGCTTGGACTCAACCTCGGAGGCCGCACTTATTTTGCGGCTTCCAACGAAGACACCCTGGACAGATTCTACCGTTCCAAGACCGTGGAATCGGTTTCCACGGTGTCGTCAAATTTGCCACGCTGTCAGGCAGAAGGATGTAATACGGACCTCTCCGAAGCCAAGCACTACCACCGCCGCCACAAAGTTTGTGAGTTCCACTCCAAGGCTGCCACCGTCATTGCCGCCGGGTTGACTCAGCGATTCTGCCAGCAGTGCAGCAGATTCCATCTTCTTTCAGAATTTGATAATGGGAAACGGAGCTGCAGGAAGAGACTGGCAGATCACAATCGTCGCAGAAGAAAAACTCAGCAGCCAACTCAAGACATTCACAAATCTCAGCCTTCTTCGGACAATGTTACATGGTCCTCGCCTGAATCTGGAGCTCAATCTTCCTCATCGCTGAAGGTGGCAGTGTCTCCCCCAGATTATTTCCAGCAAAGACCCAATCAAAATAGAGGCACTTCTTCAACATCATCTGGGTCATTGTTTTTCTCAAGTGGGACCAATTTGCATGGCTAA 999 0.5315 MLDYEWNTSMILLAGNEGAGGEPDQTRRQIFDHNFAMLTDPILHGSTPTATTGFSHHHPFNPPQHHHHHQQQAFLDPRAFQSASTTSFSPPPSVLSLNPIPPLAPSHCGLGTSSGLGFLLMSKSEDVTSPMNFDGSSHGLGPGPGPGLGLNLGGRTYFAASNEDTLDRFYRSKTVESVSTVSSNLPRCQAEGCNTDLSEAKHYHRRHKVCEFHSKAATVIAAGLTQRFCQQCSRFHLLSEFDNGKRSCRKRLADHNRRRRKTQQPTQDIHKSQPSSDNVTWSSPESGAQSSSSLKVAVSPPDYFQQRPNQNRGTSSTSSGSLFFSSGTNLHG 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01487 332 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 137 323 IPR044817 GO:0003677
Phco3g01487 332 MobiDBLite consensus disorder prediction 267 332 - -
Phco3g01487 332 MobiDBLite consensus disorder prediction 251 332 - -
Phco3g01487 332 FunFam Squamosa promoter-binding-like protein 14 179 249 - -
Phco3g01487 332 Pfam SBP domain 188 261 IPR004333 GO:0003677
Phco3g01487 332 SUPERFAMILY SBT domain 186 265 IPR036893 GO:0003677|GO:0005634
Phco3g01487 332 Gene3D - 183 249 IPR036893 GO:0003677|GO:0005634
Phco3g01487 332 ProSiteProfiles Zinc finger SBP-type profile. 185 262 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01487 Phco-Chr3 16586354 16588557 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Phco3g01487 SBP 6.3e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01487 3 16586354 16588557 Phco3g01487 3 16586354 16588557 ECH