Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01481 ATGGAATCACCCAACTCTTCCCCCATTTTCCCACAATTCACCCTTGACACCAGCAAAAACAATAACCCTGACCACTTCATTGTCGAGGACCTCTTGGATTTCTCCAACGACGATGCTGTAATCGCCGACGCCATATTCGATTCTCTCCCCGTCAACTCCACCGACTCTTCCAACGTCACCGCCGTTGATAGCTGCAACTCCTCCTCTTTCTCCGGCTACGACCCCCATACCATTCCCGACATTGGTAGCCGGAGTCTCTCCGATGGTCATTTTTCCGGTGACCTATCCGTACCGTACGACGATATAGCAGAGCTAGAATGGCTTTCGAATTTCGTCGAGGAGTCTTTTTCCAGCGAGGACCTGCAGAAGATGCAGCTGATATCGGGCATGAATGCGAGAAACGACCACGTACCAAAGGCCCGCGGGTTCCACTCCGAGCCCACAAGAAGCGGGTTTCACTCCGAGCCCACCAGAAACAACCCGATATTCAATTCGGAAGTGTCGGTTCCAGCCAAGGCCCGTAGCAAAAGGTCCCGCGGGCCCCCATGCAACTGGGCCTCGCGTCTCCTCGTCCTGTCCCCAACGACGTCGTCGTCTTCAGACCCTGAGATCGTTGTTCCTGTCCCCACTCCTCCCTGCACTAAAAAGCCCGCAAAGGCAACTCCAAGAAAGAAGGACAGCGGAGATGGCAGTGGAGGCGACGGACGCAGATGCCTGCATTGCGCCACGGACAAGACACCACAGTGGCGAACCGGGCCCATGGGCCCAAAGACACTGTGTAACGCTTGTGGAGTGAGGTACAAGTCGGGGCGGCTGGTGCCCGAGTACAGGCCCGCGGCAAGCCCAACGTTTGTTCTGACAAAGCACTCCAACTCGCACCGCAAGGTGCTGGAGTTGCGAAGACAAAAGGAGATGGTGCGGGCCCAGCAGCACCAGCAACAACAGTTCCTACAACACCATCATCATCATCAGAACATGCTGTTAGATGTATCCAACAGTGAAGATTACTTGGTCCACCAACACATGGGACCCGATTTCAGGCAGCTTATCTAG 1053 0.5518 MESPNSSPIFPQFTLDTSKNNNPDHFIVEDLLDFSNDDAVIADAIFDSLPVNSTDSSNVTAVDSCNSSSFSGYDPHTIPDIGSRSLSDGHFSGDLSVPYDDIAELEWLSNFVEESFSSEDLQKMQLISGMNARNDHVPKARGFHSEPTRSGFHSEPTRNNPIFNSEVSVPAKARSKRSRGPPCNWASRLLVLSPTTSSSSDPEIVVPVPTPPCTKKPAKATPRKKDSGDGSGGDGRRCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFVLTKHSNSHRKVLELRRQKEMVRAQQHQQQQFLQHHHHHQNMLLDVSNSEDYLVHQHMGPDFRQLI 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01481 350 FunFam GATA transcription factor 228 315 - -
Phco3g01481 350 ProSitePatterns GATA-type zinc finger domain. 238 263 IPR000679 GO:0006355|GO:0043565
Phco3g01481 350 Gene3D - 233 282 IPR013088 GO:0006355|GO:0008270
Phco3g01481 350 MobiDBLite consensus disorder prediction 150 166 - -
Phco3g01481 350 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 233 296 - -
Phco3g01481 350 SMART GATA_3 232 282 IPR000679 GO:0006355|GO:0043565
Phco3g01481 350 MobiDBLite consensus disorder prediction 142 181 - -
Phco3g01481 350 MobiDBLite consensus disorder prediction 219 237 - -
Phco3g01481 350 CDD ZnF_GATA 237 284 IPR000679 GO:0006355|GO:0043565
Phco3g01481 350 PANTHER GATA TRANSCRIPTION FACTOR 18 313 - -
Phco3g01481 350 Pfam GATA zinc finger 238 271 IPR000679 GO:0006355|GO:0043565
Phco3g01481 350 ProSiteProfiles GATA-type zinc finger domain profile. 232 268 IPR000679 GO:0006355|GO:0043565
Phco3g01481 350 PIRSF Txn_fac_GATA_plant 10 330 IPR016679 GO:0003677|GO:0005634|GO:0045893
Phco3g01481 350 MobiDBLite consensus disorder prediction 194 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01481 Phco-Chr3 16295567 16297122 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco3g01481 GATA 3.2e-15 CL0167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01481 3 16295567 16297122 Phco3g01481 3 16295567 16297122 ECH