Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01473 ATGCCCTCTATTTCCTTTCTGTTTACCAATAACCCTCTTTGGTTCTTGTTTGATGAACTAATTATGGATCATAAAAGACCATATCATTGCCTTGTTATGCTCTTTGTGTTGGCCATTTGTTTTGAGGCATCGTTGGGAGAAACAAATGCTCAAATTTTGATGAGGTTCAAAGGTTCCTTGTCAAATGGCAAAGCCTTAACCAACTGGGGGAACGAGTCTAGTTTATGTAGCTGGACTGGGTTGTTATGCCGCGCAAACCAAACATTTTATGGCTTGAGACTGGAGCACATGGGACTGGGTGGGACGATTGATGTAGAAACCTTATTTGAATTGCCAACATTGGTAAGCTTTAGTGTCATTAACAATACATTTGAGGGTCCAATGCCTGAGTTCAAAAAGCTTGTGAGGTTAAGGGCATTGTTTCTGTCCAATAACAAGTTTTCTGGTGATATTCCGGATGATGCTTTTGAGGGCATGAGAAAACTGAAAAGGGTATTCTTGGCAGAAAATGGCTTCACTGGTCGTATTCCAAAGTCACTTGCTAACTTGCCAAGACTCTTGGATTTGGACTTGCGCCGGAATGGTTTTGGAGGAAACATACCAGAATTTCAACACCAGAATTTCAGAGTGTTTAATTTGTCTTATAACCAATTGGAGGGTCAAATACCAGAAAGCTTAAGCAACATGAATCCAAGTTCATTTGCTGGCAACGAAGGCCTTTGTGGAAAACCTCTATTTTACTGCAATCATTATGGTGGCAACGAATCTAGATCAGTGGATCCCAGCCCTGCTTCACCTCAAAGAAAGGGAAAGAAACACAGAATCCTTATAACTGTCATAATAGTAGTGGCAGTGGCTGCTTTTGCTTCAATAGTTTCACTTCTATTTATTCATAACTACAGGAGAAAAAGGTTTCAACCCCGAATAGTAGCCAAGCAGACAAATTCCCAGAAAAGTGCAGGCTTCAAGGAATCACAATCCGTTGATCTGACAGCTGATTTCAAGGGTGGAGATGGCGAATTGAACTTTGTTAGGGAAGACAAAGGAGGATTTGATTTGCAAGAGCTGCTTAGAGCCTCAGCAGTGGTTCTTGGTAGTGGCAGTTTCGGGTCCAGTTACAAGGCTATGATTTTGAGTGGACCAACAGTGGTTGTGAAAAGGTTTAGGCACATGAACAATGTTGGGAAACAAGAGTTCAGTGAGCACATGCAAAAGCTTGGAAGTTTGACACACCCTAATCTTCTCCCTCTTGCAGCATTCTACTACAGAAAAGAAGATAAGTTCTTGGTTTATGACTTCGCTGAAAATGGCAGCTTGGCCAGTCATCTACATGGCAGAAATGACTCTGTTCTACCTTGGTCCACCCGTTTAAAAATCATAAAAGGGGTGGCTAGGGGCTTAGCCTACCTTTGTGAAAACTTCCCTGGGAAAAGCCTACCTCATGGTCATCTCAAGTCCTCTAATGTGGTGCTGGATCATTCATTTGAGCCACACTTGACTGAATATGGCCTTGTGGAAGTGATTAGTAAGAGCCATGCTCAGAAGTTCATGGCAGCCTACAAGGCCCCAGAGATCAGCAAATTTGGTAGGCCAAATGTGAAAAGTGATGTGTGGTGTCTGGGGATCCTCATTCTGGAGGTGCTGACAGGGAAATTCCCAGCAAATTATCTGAGACCTGGGAAGGGTGGGAATAATGCTGACTTGGCAACATGGGTGGATTCAGTTGTGAGAGAAGAATGGACTGGTGAGGTGTTTGATAAGGACATCTTGGGGACTAGGAATGGGGAGGGTGAAATGATGAAGCTGTTGAGGATTGGGATGTTTTGCTGCAAATGGAGTGTGGAGAATAGGTGGGATTGGAGGGAGGCAGTGGCCAAGATTGAGGAGGTAAAGGAGAAAGATGGTGAGGATGATTATTCTTCTTATTATGTCAGTGAAGGGGATTTGAATTCAAGGACTATGACTGAAGATGAGTTCTCTTTTTCTCTCACTAATTGA 1998 0.4299 MPSISFLFTNNPLWFLFDELIMDHKRPYHCLVMLFVLAICFEASLGETNAQILMRFKGSLSNGKALTNWGNESSLCSWTGLLCRANQTFYGLRLEHMGLGGTIDVETLFELPTLVSFSVINNTFEGPMPEFKKLVRLRALFLSNNKFSGDIPDDAFEGMRKLKRVFLAENGFTGRIPKSLANLPRLLDLDLRRNGFGGNIPEFQHQNFRVFNLSYNQLEGQIPESLSNMNPSSFAGNEGLCGKPLFYCNHYGGNESRSVDPSPASPQRKGKKHRILITVIIVVAVAAFASIVSLLFIHNYRRKRFQPRIVAKQTNSQKSAGFKESQSVDLTADFKGGDGELNFVREDKGGFDLQELLRASAVVLGSGSFGSSYKAMILSGPTVVVKRFRHMNNVGKQEFSEHMQKLGSLTHPNLLPLAAFYYRKEDKFLVYDFAENGSLASHLHGRNDSVLPWSTRLKIIKGVARGLAYLCENFPGKSLPHGHLKSSNVVLDHSFEPHLTEYGLVEVISKSHAQKFMAAYKAPEISKFGRPNVKSDVWCLGILILEVLTGKFPANYLRPGKGGNNADLATWVDSVVREEWTGEVFDKDILGTRNGEGEMMKLLRIGMFCCKWSVENRWDWREAVAKIEEVKEKDGEDDYSSYYVSEGDLNSRTMTEDEFSFSLTN 665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01473 665 FunFam Nuclear pore complex protein NUP107 46 202 - -
Phco3g01473 665 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 34 635 IPR046959 -
Phco3g01473 665 FunFam Pollen receptor-like kinase 1 434 641 - -
Phco3g01473 665 Gene3D Phosphorylase Kinase; domain 1 338 433 - -
Phco3g01473 665 Gene3D Ribonuclease Inhibitor 46 238 IPR032675 -
Phco3g01473 665 Pfam Leucine rich repeat 136 195 IPR001611 GO:0005515
Phco3g01473 665 ProSiteProfiles Protein kinase domain profile. 358 665 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01473 665 Pfam Protein tyrosine and serine/threonine kinase 363 555 IPR001245 GO:0004672|GO:0006468
Phco3g01473 665 Gene3D Transferase(Phosphotransferase) domain 1 434 648 - -
Phco3g01473 665 Pfam Leucine rich repeat N-terminal domain 50 83 IPR013210 -
Phco3g01473 665 SUPERFAMILY Protein kinase-like (PK-like) 363 628 IPR011009 -
Phco3g01473 665 SUPERFAMILY L domain-like 69 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01473 Phco-Chr3 16045916 16050163 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco3g01473 PK_Tyr_Ser-Thr 2.7e-26 CL0016