Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01465 ATGGAATCCCAGAAAAGTCCATTAATAGATGACAGCTTATTAGATATTTTCCAAGATACGGAGTTTCAAGACACCGACTTTGGTGGAGGGGACCTCTTTTCCATTTTGGAGAGCCTACAAGACTTCAAACATTCCCCCCCCATTAACAATGAAGCTGTTATTTGCCTAACTTCAAAACAAAACGAGCAAAACTCAACAATGGAGTCCCAAAAGGTCTCCATAGCTTCAAGTGCTCCACAAGATTCTGAAACAGATCCTGAAATCTCACCCAAAAGCAAGACAAAAAAGCTTCACCCCACTTTGCTAGAGGAACCACCGAAGGTGTCTCATATAACAATGGAGCGCAACCGCAGGAAGCAAATGAATGAGAATTTCTCCGTATTGAGGTCACTTATGCCTTCCTTCTATGTCAAACGGGGAGACCAAGCATCAATAATTGAAGGAGTGGTTGATTACATCAAGGAGTTGCAACAGCTGCAGCAATGCCTAGACGCCAAGAAACAAAGAAAACTTTACACTGATGTACTAAGCCCTAGGCTAGTTTCAAGCACAAGGCCTTCACCACTAAGTCCTAGAAAACCACCCTTGAGCCCTAGAATAAACCTGCCCATCAGTCCAAGGACTCCACAGCCTGACAGCCCTTACAAGCCCAGGTTGCAACCAGGTTACCTCTCCCCAACTATAGCCAACTCTCCCACTTCTTCAGCTTCTTCTTCCATCAACGACAATATCAACGAGCTTGTTGCAAATTCCAAGTCTGTTATTGCCGATGTTGAGGTCAAGTTTTCTGGTCCACATGTTCTTCTGAAGACAGTTTCACCACCAATTCCTGGACAGGCTCTGAGAATAATATCAGCTCTTGAAGACCTCGCACTCGAAATCCTCCATGTGAACATCAGCATTGCTGATGAAACTATGGTCAACTCATTCACTATTAAGATTGGAATTGAATGCCAACTCAGTGCCGAAGAACTCGCTCAACAAATCCAGCAAACATTCTGCCAAAGATGGCTTCCAGACTCCAGAACGAGCATCAGACCTCACCCTTCCCCTTTTTAG 1059 0.4448 MESQKSPLIDDSLLDIFQDTEFQDTDFGGGDLFSILESLQDFKHSPPINNEAVICLTSKQNEQNSTMESQKVSIASSAPQDSETDPEISPKSKTKKLHPTLLEEPPKVSHITMERNRRKQMNENFSVLRSLMPSFYVKRGDQASIIEGVVDYIKELQQLQQCLDAKKQRKLYTDVLSPRLVSSTRPSPLSPRKPPLSPRINLPISPRTPQPDSPYKPRLQPGYLSPTIANSPTSSASSSINDNINELVANSKSVIADVEVKFSGPHVLLKTVSPPIPGQALRIISALEDLALEILHVNISIADETMVNSFTIKIGIECQLSAEELAQQIQQTFCQRWLPDSRTSIRPHPSPF 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01465 352 MobiDBLite consensus disorder prediction 180 237 - -
Phco3g01465 352 Coils Coil 149 169 - -
Phco3g01465 352 Gene3D - 102 171 IPR036638 GO:0046983
Phco3g01465 352 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 105 173 IPR036638 GO:0046983
Phco3g01465 352 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 105 156 IPR011598 GO:0046983
Phco3g01465 352 SMART finulus 111 162 IPR011598 GO:0046983
Phco3g01465 352 PANTHER TRANSCRIPTION FACTOR FAMA 13 333 IPR044283 GO:0003700|GO:0010052
Phco3g01465 352 MobiDBLite consensus disorder prediction 188 216 - -
Phco3g01465 352 MobiDBLite consensus disorder prediction 64 85 - -
Phco3g01465 352 MobiDBLite consensus disorder prediction 64 100 - -
Phco3g01465 352 MobiDBLite consensus disorder prediction 86 100 - -
Phco3g01465 352 Pfam Helix-loop-helix DNA-binding domain 107 157 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01465 Phco-Chr3 15851313 15854498 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco3g01465 HLH 3.7e-12 No_clan