Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01462 ATGGCTAGGGAGCAGGATTTGCATCCGATTAGGAGCTGGCTTATTGACTTCGGAGGATTTGCAAAGAAAGTGAAAAACAATACTGTATCTTCAGCTGATCAAATCAAGGATTGTGGGGCATATCGAGAATGTCCTAACTGTCATTATCGTATTGAAAACAGTGATGTTTCTAGTGAGTGGCCTGGCTTTCCTCTTGGTGTAAAGTTTGATCCTTCTGATGTAGAACTCTTAGAACATTTAGCAGGAAAATGTGGTGTTGGAAACACACAGCCAGATATGTTTATCAACGAGTTCATCACAACTCTGGAAGGAGACCAAGGTATTTGCTACACTCATCCAGAAAATCTTCAAGGTGCTAAGAAAGATGGGAGTTATTTCCATTTCTTTCACAGGACAATCAATGCTTATGCTACTGGTCAAAGAAAGCGAAGAAAGATTCATCATCAACAGGGTGTGACTGAAGAACGTTGGCGTTGGCACAAGACTGGTAAGACCAAAGCTATAATAGAAAATGGAATTTGCAGAGGCTTTAAGAAAATCATGGTTCTTCATCTAAGATCTAAGAGTGGGTTCAAACCCTACAAATCCAACTGGGTAATGCATCAGTATCATCTAGGGACTGAAGAAGAAGAAAAGGAAGGTGAATATGTGGTTTCTAAAATTTTTTATCAACAGCAAAAACAGACTGAGAAAAATGAGGACAATCCAATGGTTGAAGATTCTGACAATATAGTGTCAAGAACAAGTCCAAGGACTCCAAAACCAAATCCCCCCAATCCACCTCGTGCAGGAAACTCTGTTGATTGTGATGATTACATTGATGAAACTGTACCTCTGCCTTCTGCCCAGGATACCAAGGCAATCCTTGGAGAATCACATGCCCCAATATCTGATAATCACGATCTAGACAGTTCTGCATGGTTATCTGGCGAATCACAAGTTGTGGAACACACTGAATACGATGGCTTGGACGACATATTATTGTGCAAGGAAATCTTAGATTCTTCTACTCTGTTAAATGATTCTGGATTGGACTCCAGCAATCTCTATGACTTAGCATTCTATGATAACCAAATGGCTAGAAATGATAACGAATCTTGCGGAATTTCTGTCCTGGATACGCTGGAATTAGACACTCCAGATTTTGATCTTTCTAATTTGAATTTTTGTTCTCAAAACAGTATCCTTCAGTGGATGGGCAGCTTTTATCCTTGTGAGCTGAAACAATACTGTGCCTTCGGTCACGGAACTCAAGCCACCCTTTTGTCAAATCATGTAGTTAAACTCAATCCTAGAGCTGGAGTTTTGGTCATCATGTGGTGA 1323 0.4021 MAREQDLHPIRSWLIDFGGFAKKVKNNTVSSADQIKDCGAYRECPNCHYRIENSDVSSEWPGFPLGVKFDPSDVELLEHLAGKCGVGNTQPDMFINEFITTLEGDQGICYTHPENLQGAKKDGSYFHFFHRTINAYATGQRKRRKIHHQQGVTEERWRWHKTGKTKAIIENGICRGFKKIMVLHLRSKSGFKPYKSNWVMHQYHLGTEEEEKEGEYVVSKIFYQQQKQTEKNEDNPMVEDSDNIVSRTSPRTPKPNPPNPPRAGNSVDCDDYIDETVPLPSAQDTKAILGESHAPISDNHDLDSSAWLSGESQVVEHTEYDGLDDILLCKEILDSSTLLNDSGLDSSNLYDLAFYDNQMARNDNESCGISVLDTLELDTPDFDLSNLNFCSQNSILQWMGSFYPCELKQYCAFGHGTQATLLSNHVVKLNPRAGVLVIMW 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01462 440 MobiDBLite consensus disorder prediction 227 270 - -
Phco3g01462 440 Pfam No apical meristem (NAM) protein 64 205 IPR003441 GO:0003677|GO:0006355
Phco3g01462 440 SUPERFAMILY NAC domain 48 224 IPR036093 GO:0003677|GO:0006355
Phco3g01462 440 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 11 316 IPR044799 GO:0003700
Phco3g01462 440 Gene3D NAC domain 72 229 IPR036093 GO:0003677|GO:0006355
Phco3g01462 440 ProSiteProfiles NAC domain profile. 63 224 IPR003441 GO:0003677|GO:0006355
Phco3g01462 440 FunFam NAC domain-containing protein 8 72 228 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01462 Phco-Chr3 15788127 15792077 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco3g01462 NAM 3.7e-18 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01462 3 15788127 15792077 Phco3g01462 3 15788127 15792077 ECH