Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01459 ATGTCAAGCAATGCATTAACTCTCTTTATCTTGTTGCTTAAAATCTCCTTGTTTCCATCCGCTTCTGCTTTGAACCAGGAAGGTCTCTCTCTACTTTCATGGCTCTCAACTTTCAATTCCTCTGATTCTGCTGCTGCATTTTCTTCATGGGATTCAACTCACCAAAGTCCGTGCAGATGGGTCTACGTAAAATGTTCCAAAGAAGGGTCTGTTTCAGAGATCATAATAGCATCCATTGATCTTCACACCACCTTCCCTACACAGCTCCTTTCTCTTGGCAACCTTACCACTCTAGTCATCTCAAATGCAAATCTTACCGGTGAGATTCCCAGTTCAGTGGGAAACTTGTCATCCCTGGTTACTTTGGACCTCAGCTTCAATTCTTTATCAGGAAGCATTCCAGCTGAAATAGGAAATTTATACAAGCTGCAGTGGCTGTATATGAATTCAAATTCCTTGCAAGGTGGAATTCCATCCCAAATTGGAAACTGTTCAAAGCTGAGGCAGCTGGAACTGTTTGATAACCAGCTCTCTGGGGTGATTCCAGGAGAAATAGGCCAGTTGAGGAATCTTGAAACGCTTCGGGCAGGTGGAAACCCAGGTATCCATGGTGAAATTCCAATGCAGATATCAAACTGCAAGGCTCTAGTTTATTTAGGCCTTGCTGATACTGGGATATCAGGGGAGATTCCACCAACTATAGGAGAACTAAAAAGTCTCAAGACACTTCAAATCTACACTGCACAGCTTAGAGGTCACATTCCACCAGAAATTCAAAACTGCTCAGCCTTGGAGGAGTTGTTTCTCTATGAAAACCAACTTTCTGGAAATATTCCTTCCGAATTGGGTTCCATTAAGAGCCTCAGGAAGGTACTTTTGTGGCAGAATAATTTCACTGGGAAAATTCCAGAAAGTCTGGGGAACTGTACAAGCCTGAGAGTTATAGATTTTTCTATGAACTCTTTGGTTGGAGAACTTCCTGCGACTCTCAGTAGTCTACTCTTGTTGGAGGAGCTTCTTCTGTCTAATAATAATATTTTTGGAGAGATACCTTCCTATATCGGGAACTTCTCCAGTTTGAAGCAACTCGAATTGGATAATAACAGATTCACTGGGGAGATTCCACCTCTCTTGGGGCAGCTGAAGGAACTCACCTTGTTCTATGCCTGGCAAAATCAGCTCCATGGAAGCATACCAGCAGAACTCTCCAACTGTGAGAAACTTCAAGCACTTGATCTTTCACATAATTTCCTTACTGGGTCCATTCCAAGTTCACTATTTCATCTAGAGAACTTAACTCAGTTGTTGTTGTTATCAAATAGACTTTCAGGTCAAATTCCTCCAGATATTGGCAGTTGCACAAGCTTGATCAGGCTAAGGCTGGGATCAAACAACTTCACAGGTCAAATTCCACCAGAAATTGGCTTTTTGAGAAGTTTGAGCTTTCTTGAATTATCGGATAATGTACTCAGTGGAGATATACCCTTTGAGATAGGTAACTGTGCTAAGCTAGAGATGCTCGACTTACACTGCAATAAATTGCTAGGAGCAATTCCTTCCTCATTAGAATTCTTAGTTGGTCTTAATGTCTTGGATCTTTCTGCAAACAGAATAACTGGCCGCATCCCTGAAAATTTAGGCAAGTTAGCATCTCTAAATAAGTTGATACTCAGTGGAAACCAAATCACAGGTTTGATCCCTCAGTCACTGGGCTTTCGTAATAGTTTGCAGTTGCTTGACCTAAGCAACAATAGGATCAGTGGTTCCATTCCTGATGAGATTGGTCATTTGCAAGAATTAGACATCCTCTTGAACTTGAGCTGGAATTGTTTAACAGGCCCCATCCCAGAGACCTTCTCAAATCTCTCAAGACTTTCCAACTTGGACCTCTCCCACAACAAGCTCACTGGGAGTCTTAGAGTACTGGGTAGTCTTGACAATCTGGTTTCTCTTAATGTCTCCTACAACAGTTTTTCTGGTTCTCTTCCTGATACAAAGTTCTTCAGGGATCTTCCCCCTGCTGCATTTGCTGGCAACCCTGACCTATGTATTACCGAGTGTCAAATAAGTAGACATCACCAAGGAATCAAGTCAATAAGAAACATTATCTTATATACTTTCCTTGGTGTTATTATCACTTCTGGGTTTGTTACTTTTGGAGTAATCTTGGCAATGAAAATTCATGGGGGTAGTAACTTTGACGGTGAAATGCAATGGGCTTTTACTCCTTTTCAAAAGCTCAACTTCTCCATCAATGACATCATCCCAAAGTTATCAGATTCAAACATTGTAGGAAAGGGTTGCTCAGGAGTCGTTTACCGTGTGGAGACTGCAACAAACCAGGTTGTTGCAGTGAAGAAGCTGTGGCCACCAAAGAATGATGAGCCACCGGAGAGAGACCTCTTTACTGCTGAAGTTCACACCCTTGGATCAATAAGGCACAAAAATATAGTGAGACTTTTAGGATGCTACAACAATGGAAGAACTAGATTGCTCTTATTCGATTACATATGCAATGGGAGTTTGTCTGGATTGCTCCATGAAAATAGTTTGTTCTTGGACTGGGATGCAAGATATAAAATCATTCTAGGAGCTGCTCATGGATTAGAATATCTTCATCATGATTGTATCCCTCCAATTATTCATAGAGACATTAAGGCTAACAACATCTTGATAGGTCCACAATTTGAAGCTTTTCTTGCAGATTTTGGCCTTGCAAAACTTGTTGGTTCCTCTGATAATTCCGGAGCCTCTGCTATAGTTGCAGGTTCTTATGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACTGAGAAGAGTGATGTGTATAGCTTTGGTGTAGTTATCATTGAGGTCTTAACGGGGATGGAGCCAATAGATAGAAGGATTCCAGAAGGTTCCCACATTGTCCCTTGGGTTATGAGAGAAATCAGAGAGAAGAGAAGAGAATTTGAATCAATTCTGGACCAGAAACTGGCACTGCAGTCTGGAACACAAATTCCTGAGATGCTTCAAGTGCTAGGGGTGGCTCTCCTCTGTGTTAATCCATCCCCTGATGAAAGACCTACAATGAAAGATGTAACAGCAATGCTCAAGGAAATCAGACATGAAAATGTGAATTTTGATTTTGAGAAGTCAAATCTTCTACAAAAAGGTGTTATTAACAATCCAAAAGCTTCAATTCAATGTCCAAGCTTCTCCAGATCTTGTAAACCTCTAACTGAATCACCATCTTCTTCAGTGTCGCCAAATTAA 3261 0.4118 MSSNALTLFILLLKISLFPSASALNQEGLSLLSWLSTFNSSDSAAAFSSWDSTHQSPCRWVYVKCSKEGSVSEIIIASIDLHTTFPTQLLSLGNLTTLVISNANLTGEIPSSVGNLSSLVTLDLSFNSLSGSIPAEIGNLYKLQWLYMNSNSLQGGIPSQIGNCSKLRQLELFDNQLSGVIPGEIGQLRNLETLRAGGNPGIHGEIPMQISNCKALVYLGLADTGISGEIPPTIGELKSLKTLQIYTAQLRGHIPPEIQNCSALEELFLYENQLSGNIPSELGSIKSLRKVLLWQNNFTGKIPESLGNCTSLRVIDFSMNSLVGELPATLSSLLLLEELLLSNNNIFGEIPSYIGNFSSLKQLELDNNRFTGEIPPLLGQLKELTLFYAWQNQLHGSIPAELSNCEKLQALDLSHNFLTGSIPSSLFHLENLTQLLLLSNRLSGQIPPDIGSCTSLIRLRLGSNNFTGQIPPEIGFLRSLSFLELSDNVLSGDIPFEIGNCAKLEMLDLHCNKLLGAIPSSLEFLVGLNVLDLSANRITGRIPENLGKLASLNKLILSGNQITGLIPQSLGFRNSLQLLDLSNNRISGSIPDEIGHLQELDILLNLSWNCLTGPIPETFSNLSRLSNLDLSHNKLTGSLRVLGSLDNLVSLNVSYNSFSGSLPDTKFFRDLPPAAFAGNPDLCITECQISRHHQGIKSIRNIILYTFLGVIITSGFVTFGVILAMKIHGGSNFDGEMQWAFTPFQKLNFSINDIIPKLSDSNIVGKGCSGVVYRVETATNQVVAVKKLWPPKNDEPPERDLFTAEVHTLGSIRHKNIVRLLGCYNNGRTRLLLFDYICNGSLSGLLHENSLFLDWDARYKIILGAAHGLEYLHHDCIPPIIHRDIKANNILIGPQFEAFLADFGLAKLVGSSDNSGASAIVAGSYGYIAPEYGYSLRITEKSDVYSFGVVIIEVLTGMEPIDRRIPEGSHIVPWVMREIREKRREFESILDQKLALQSGTQIPEMLQVLGVALLCVNPSPDERPTMKDVTAMLKEIRHENVNFDFEKSNLLQKGVINNPKASIQCPSFSRSCKPLTESPSSSVSPN 1086
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01459 1086 Pfam Leucine Rich Repeat 407 429 IPR001611 GO:0005515
Phco3g01459 1086 Pfam Leucine Rich Repeat 597 622 IPR001611 GO:0005515
Phco3g01459 1086 ProSiteProfiles Leucine-rich repeat profile. 407 429 IPR001611 GO:0005515
Phco3g01459 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 407 691 - -
Phco3g01459 1086 ProSitePatterns Protein kinases ATP-binding region signature. 764 787 IPR017441 GO:0005524
Phco3g01459 1086 SMART LRR_typ_2 116 139 IPR003591 -
Phco3g01459 1086 SMART LRR_typ_2 477 501 IPR003591 -
Phco3g01459 1086 SMART LRR_typ_2 525 548 IPR003591 -
Phco3g01459 1086 SMART LRR_typ_2 622 644 IPR003591 -
Phco3g01459 1086 SMART LRR_typ_2 140 164 IPR003591 -
Phco3g01459 1086 SMART LRR_typ_2 575 597 IPR003591 -
Phco3g01459 1086 SMART LRR_typ_2 645 678 IPR003591 -
Phco3g01459 1086 SMART LRR_typ_2 429 453 IPR003591 -
Phco3g01459 1086 SMART LRR_typ_2 357 381 IPR003591 -
Phco3g01459 1086 SMART LRR_typ_2 549 572 IPR003591 -
Phco3g01459 1086 SMART LRR_typ_2 333 356 IPR003591 -
Phco3g01459 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 24 199 - -
Phco3g01459 1086 ProSitePatterns Serine/Threonine protein kinases active-site signature. 880 892 IPR008271 GO:0004672|GO:0006468
Phco3g01459 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 837 1051 - -
Phco3g01459 1086 Pfam Protein kinase domain 761 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01459 1086 ProSiteProfiles Protein kinase domain profile. 758 1041 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01459 1086 SMART LRR_sd22_2 405 434 - -
Phco3g01459 1086 SMART LRR_sd22_2 525 548 - -
Phco3g01459 1086 SMART LRR_sd22_2 116 142 - -
Phco3g01459 1086 SMART LRR_sd22_2 622 647 - -
Phco3g01459 1086 SUPERFAMILY RNI-like 82 395 - -
Phco3g01459 1086 SMART serkin_6 758 1033 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01459 1086 Pfam Leucine rich repeat N-terminal domain 25 66 IPR013210 -
Phco3g01459 1086 SUPERFAMILY RNI-like 327 663 - -
Phco3g01459 1086 Gene3D Phosphorylase Kinase; domain 1 740 836 - -
Phco3g01459 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 734 836 - -
Phco3g01459 1086 SUPERFAMILY Protein kinase-like (PK-like) 743 1033 IPR011009 -
Phco3g01459 1086 Gene3D Ribonuclease Inhibitor 23 200 IPR032675 -
Phco3g01459 1086 PRINTS Leucine-rich repeat signature 622 635 - -
Phco3g01459 1086 PRINTS Leucine-rich repeat signature 576 589 - -
Phco3g01459 1086 Gene3D Transferase(Phosphotransferase) domain 1 837 1055 - -
Phco3g01459 1086 Gene3D Ribonuclease Inhibitor 335 405 IPR032675 -
Phco3g01459 1086 Pfam Leucine rich repeat 94 153 IPR001611 GO:0005515
Phco3g01459 1086 Pfam Leucine rich repeat 503 562 IPR001611 GO:0005515
Phco3g01459 1086 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 348 1028 - -
Phco3g01459 1086 ProSiteProfiles Leucine-rich repeat profile. 575 597 IPR001611 GO:0005515
Phco3g01459 1086 Gene3D Ribonuclease Inhibitor 201 334 IPR032675 -
Phco3g01459 1086 Gene3D Ribonuclease Inhibitor 406 693 IPR032675 -
Phco3g01459 1086 ProSiteProfiles Leucine-rich repeat profile. 624 646 IPR001611 GO:0005515
Phco3g01459 1086 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 200 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01459 Phco-Chr3 15736620 15740317 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Phco3g01459 Pkinase 3.3e-42 CL0016