Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01454 ATGGGCGATTCCAAGGTGGAAACCATTTCCCGATTAGCGCAATGGAGAATCGACAACTTCGGACCCTGCCAGTACAAAAAGTCCGACCCTTTCAAGCTCGGAATTTGGAACTGGTACATTTCCATAGAACGGAACAGGTACCTCTACATACACATCTTTCCTGAGCCTTCTCGGCTTTCTAAGGAACAGCCACCTGTGGCTCGCTTCATACTACGAGTCTCCAACAACTCTGGTCCTACCCGCAAATTTTACATCTCCCCTGTTCATGAAAGGGTGCTCAGAACAAGTGACGACTTTGTCTGGCCTGTTGATACTGCATTCCTTGGACGCTTTGTTGTTGATGTTGAATTTCTTGACCTGAAGGCCTGCCCTGGGAATGGTGGAGTAACCAGATCTATATGGCCATCTGATGGAAAACTGCAAACTGTTGCAGCTCAAAGCAGTCTTCGATGCCTGTCTCGCATGCTTGACGAGGCTATACATGCTGACCTCACCATCATCACTGCAGATGGTACTCTGAAGGCTCACAAGGCAGTTTTATCTGCTAGTTCTACAGTGTTCCATGGCTTGTATCTTCACAATGGTGACGAAGAAGATACATCTACGATCCACATGGAAGATATGTTTCAAGAATCCTGCAAGTCTCTTCTAAGTTACCTGTACGGTACTATTAAACAAGAAGATTTCTGGAACCACAGGCTTCCATTGCTTTCAGCAGCCAATAAATATGAAATTGGTGATCTCAAAGATGCCTGTGAGGAAAGCCTACTAGAAGATCTTAACTCAGGAAATGTTCTGGAGAGGCTAAAGGACGCTTGGCTTTACCAGTTACAAAACTTAAAGAAAGGGTGCTTCACATTCTTATTTGATTTTGGTAAGATATATGATGTTAGAGATGAAATAAATACCTTTTTCCAACATGCTGACAGGGAGCTAATGCAGGAGATGTTTCTGGAAGTGCTTACAATTTTGAAATAG 978 0.4376 MGDSKVETISRLAQWRIDNFGPCQYKKSDPFKLGIWNWYISIERNRYLYIHIFPEPSRLSKEQPPVARFILRVSNNSGPTRKFYISPVHERVLRTSDDFVWPVDTAFLGRFVVDVEFLDLKACPGNGGVTRSIWPSDGKLQTVAAQSSLRCLSRMLDEAIHADLTIITADGTLKAHKAVLSASSTVFHGLYLHNGDEEDTSTIHMEDMFQESCKSLLSYLYGTIKQEDFWNHRLPLLSAANKYEIGDLKDACEESLLEDLNSGNVLERLKDAWLYQLQNLKKGCFTFLFDFGKIYDVRDEINTFFQHADRELMQEMFLEVLTILK 325
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01454 325 SMART BTB_4 162 260 IPR000210 GO:0005515
Phco3g01454 325 Pfam BTB/POZ domain 155 258 IPR000210 GO:0005515
Phco3g01454 325 Gene3D Potassium Channel Kv1.1; Chain A 136 289 IPR011333 -
Phco3g01454 325 ProSiteProfiles BTB domain profile. 162 221 IPR000210 GO:0005515
Phco3g01454 325 PANTHER OS08G0495500 PROTEIN-RELATED 1 324 IPR044714 -
Phco3g01454 325 SUPERFAMILY POZ domain 145 258 IPR011333 -
Phco3g01454 325 CDD BTB_POZ_ZBTB_KLHL-like 161 243 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Phco3g01454 Phco-Chr3 15598800 15607580 Dispersed/Wgd
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phco3g01454 BTB 8.4e-20 CL0033