Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01449 ATGGCAGAGATGCTGGGCCTGTTGCTCATGTTTGGAGCGATGTTGTTTGGAGTAAGAGCTGAGCTAATGGAAGATAAACAAGCATTGCTTGATTTCCTTCACAACATTAGCCACTCTCATCATCTGATCAACTGGGACAAGAGCTCTTCTGCGTGCAAAAGTTGGATAGGAGTGACCTGCAACTCTGAGCAATCACAGGTTATTGCCCTCCAACTGACCAGAACTGGATTGAGTGGTCCAATCCCACCCAACACTCTTAGCCGTCTCTCAGCACTCCAAACTGTGAGTCTTGCATCAAATAGCATAACTGGTTCTTTCCCTTCTGATTTCTCTAAGCTAAATAATTTGATCTATCTGTATCTCCAATTCAACAAATTTTCTGGTCCATTGCCATTAGACTTTTCGGTATGGAAGAATCTTAGTATTGTCAATTTATCCAACAATTCCTTCAATGGGAGCATCCCATTTTCACTTTCAAATTTGACTCATCTCTCTTCTTTAGTACTAGCCAACAACTCCCTTTCAGGTGACATTCCTGATCTCGATATCCCTACCCTGCTAGAGCTGAATTTTGCCAACAATAACCTCAGTGGGGTTGTGCCTGAATCCTTTAAGAGATTTCCAAGGGGGGCATTTTCTGGCAACAATCTTGCTTCTTCAGATGCTCTTTCTCCTTCTTTTCTTGTTCAACCCCCAAATCCTCATCCAACAAGGAAAAAATCCAAAGGACTTAGGGAACCAGCATTGTTGGGTATCATTATTGGAGCTTGTATGCTGGGAATTGCAGTTATAACAGCTTTTGTGATTGTGTGCTGCTGTGAGAAAGGTGGTACAAGTGGACAACACGTGAAGTCTCAGAACGGAGAAGTATCCAGGAAAAAGGAAGGTTCTGAAAGTCGAGACAAGAACAGAATTGTTTTCTTTGAGGGTTGCAATCTTGCATTTGACTTGGAGGACTTGTTGAGAGCATCTGCCGAGGTGCTTGGAAAGGGCACGTTTGGGACAGTGTACAAGGCTGCTCTAGAAGACGCAACAACCGTGGCAGTGAAAAGGTTGAAGGATGTCATGGTCGGAAAACGCGAGTTTGAACAACAGATGGAGATGGTGGGGAGGATTAGGCACGATAATGTGGCTGCTTTAAGGGCATATTACTATTCAAAGGAGGAGAAACTTGTGGTATATGATTACTGCGAACAGGGCAGTGTGTCTTCAATGTTGCATGGAAAAAGAGAAGCAGGCAGAATTTCTTTAGACTGGGATAGCCGTTTGAAAATAGCAATTGGTGTAGCAAGAGGCATTGCTTACATCCATGCTCAACAAGGAGAGAAACTCCTCCATGGAAACATAAAGTCCTCTAACATCTTCCTCAACCCCCGAGGATATGGTTGTCTATCTGACATTGGTCTTGCAACACTGATGAATCCAGCAATGAGGACAACAGGATACCGTGCGCCAGAAGCAACGGACACCAGAAAATCAGTTCCGGCATCTGACGTCTACAGTTTTGGTGTGCTGCTGCTTGAGCTTCTAACTGGGAGGTTTCCCTTACATGCCAAAGGAGGTGAGGAAGTTGTCCACTTGGTTAGATGGGTGAATTCTGTGGTTAGAGAGGAGTGGACTGCAGAAGTGTTTGATGTGGAGTTGCTGAGGTTTCCAAATATTGAGGAGGAAATGGTTGAGATGCTGCAAATAGGGATGGCATGTGTTGTGAGAACACCAGATCAGAGGCCCAAAATTGGTGAGCTGGTGAGAATGGTGGAGGAAATTCGTAAAGTAAATACTGAAAATAGATCATCCACTGAATCAAGATCAGAAGGTTCCACTCCAACCCCTCATTCAATTGAGACTCCTTCTACCTCTTTTGCATATTGA 1872 0.4412 MAEMLGLLLMFGAMLFGVRAELMEDKQALLDFLHNISHSHHLINWDKSSSACKSWIGVTCNSEQSQVIALQLTRTGLSGPIPPNTLSRLSALQTVSLASNSITGSFPSDFSKLNNLIYLYLQFNKFSGPLPLDFSVWKNLSIVNLSNNSFNGSIPFSLSNLTHLSSLVLANNSLSGDIPDLDIPTLLELNFANNNLSGVVPESFKRFPRGAFSGNNLASSDALSPSFLVQPPNPHPTRKKSKGLREPALLGIIIGACMLGIAVITAFVIVCCCEKGGTSGQHVKSQNGEVSRKKEGSESRDKNRIVFFEGCNLAFDLEDLLRASAEVLGKGTFGTVYKAALEDATTVAVKRLKDVMVGKREFEQQMEMVGRIRHDNVAALRAYYYSKEEKLVVYDYCEQGSVSSMLHGKREAGRISLDWDSRLKIAIGVARGIAYIHAQQGEKLLHGNIKSSNIFLNPRGYGCLSDIGLATLMNPAMRTTGYRAPEATDTRKSVPASDVYSFGVLLLELLTGRFPLHAKGGEEVVHLVRWVNSVVREEWTAEVFDVELLRFPNIEEEMVEMLQIGMACVVRTPDQRPKIGELVRMVEEIRKVNTENRSSTESRSEGSTPTPHSIETPSTSFAY 623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01449 623 ProSitePatterns Protein kinases ATP-binding region signature. 328 359 IPR017441 GO:0005524
Phco3g01449 623 SUPERFAMILY Protein kinase-like (PK-like) 326 586 IPR011009 -
Phco3g01449 623 Pfam Leucine rich repeat N-terminal domain 24 61 IPR013210 -
Phco3g01449 623 Gene3D Phosphorylase Kinase; domain 1 287 396 - -
Phco3g01449 623 Pfam Protein kinase domain 325 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01449 623 Pfam Leucine rich repeat 81 126 IPR001611 GO:0005515
Phco3g01449 623 SUPERFAMILY L domain-like 28 207 - -
Phco3g01449 623 FunFam Probable inactive receptor kinase RLK902 22 182 - -
Phco3g01449 623 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 397 601 - -
Phco3g01449 623 FunFam pollen receptor-like kinase 1 291 396 - -
Phco3g01449 623 Gene3D Ribonuclease Inhibitor 22 232 IPR032675 -
Phco3g01449 623 ProSiteProfiles Protein kinase domain profile. 322 589 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01449 623 MobiDBLite consensus disorder prediction 593 623 - -
Phco3g01449 623 MobiDBLite consensus disorder prediction 599 623 - -
Phco3g01449 623 CDD STKc_IRAK 328 589 - -
Phco3g01449 623 PANTHER OS05G0588300 PROTEIN 8 599 - -
Phco3g01449 623 Gene3D Transferase(Phosphotransferase) domain 1 397 610 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01449 Phco-Chr3 15479031 15481000 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Phco3g01449 Pkinase 8e-35 CL0016