Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01402 ATGTCTCACAGGATATCTTCGAGTTCAAAAAAAGAGCAACTAAAATTAAAAAATCAAACATTTTCTTACTCAGAGGTTCTCAATATTACCAATGGTTTCGAAATAATGATTGGAAAAGGTGGATTTGGTGAAGTTTACCTTGGAACTTTGCAAAGTGGTGAAAGAGTTGCCGTGAAGAAACTCTCTCTGTCATCAAATCAAGGTTATAAGGAGTTTAAATCAGAGGCAAAATTTCTAACGCTTGTTCATCATAGAAATGTGGTTTCTCTTGTGGGGTATTGTGATGAAGGCGATGCTAAGGCACTTATTTACGAATATCTTTCAAAGGGAAATCTCCAAGAACAATTGTCAGATAAAAGCTCAAGTGTCTTGGGATGGAAAGAGAGAGTTCAAATTGCCTTAGATGCAGCAAGTGGATTGGATTATCTGCATAATGGATGTAAGCCACCTATAATTCACAGAGATTTGAAAGGTTCCAACATCCTAGTAGATGAAAACATGCATGCCAAGATTTCTGACTTTGGATTGTCTAGAACTTTTGCAAATGATAGTGACACTCATGTCTTAACTAATTATCCAGGTGGCACACCAGGTTACATTGATCCTGAGTATCACTACTCTGGGATTCTTAATAAAAGAAGTGATGTTTACAGTTTTGGGGTAATTTTGTTAGAGCTAATTACAGGTCAACCAGCAATAAGAGGAACTCCTGAGAAACCTAGTCACATACATTCTTGGGTTAAATCCAAACTTGAAGCTGGAGATATCCAAGCAATAGTTGATCCAAGATTAGAAGGAAATTACCATGTTGCTTCAGCTTGGAAATTTTTGGATATAGCCATGTCTTGCCTTCCTCATGTTGCCATCCAAAGGCCTGACATAAGCCACATAACCTCAGAACTCAAGGATTGTTTGTCTTTGGAAGTATCCCTTCAAAGGACTGCGAGCAACAACGTACATTCATTCCTCGTGGATTCTATGCTCATTGATTTCAATGAATCTGATATAGGTCCAAATCCTAGAGACGGTGCAAGATACCAATATCCCTTCTGGAAAAAACGACAGTTGTGCGAATCAGAACGGTGCTCAGAGATGTATTTTTTTAAGGAGGCCTGCATGCTTGGTGACCGTGATAGTGCCCAGATGGCTCACAGAAGCACGAATATGGAAACCCATGAGTCCCCAATACAGCAAGCACACCATGCAGAAGAAGCTGTCCTCATGGATGAAAGATTAACTATGTCACGTCTAATATTGGTTGTAGAGCTTTAG 1272 0.3923 MSHRISSSSKKEQLKLKNQTFSYSEVLNITNGFEIMIGKGGFGEVYLGTLQSGERVAVKKLSLSSNQGYKEFKSEAKFLTLVHHRNVVSLVGYCDEGDAKALIYEYLSKGNLQEQLSDKSSSVLGWKERVQIALDAASGLDYLHNGCKPPIIHRDLKGSNILVDENMHAKISDFGLSRTFANDSDTHVLTNYPGGTPGYIDPEYHYSGILNKRSDVYSFGVILLELITGQPAIRGTPEKPSHIHSWVKSKLEAGDIQAIVDPRLEGNYHVASAWKFLDIAMSCLPHVAIQRPDISHITSELKDCLSLEVSLQRTASNNVHSFLVDSMLIDFNESDIGPNPRDGARYQYPFWKKRQLCESERCSEMYFFKEACMLGDRDSAQMAHRSTNMETHESPIQQAHHAEEAVLMDERLTMSRLILVVEL 423
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01402 423 Gene3D Phosphorylase Kinase; domain 1 13 106 - -
Phco3g01402 423 ProSiteProfiles Protein kinase domain profile. 31 323 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01402 423 SMART serkin_6 31 305 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01402 423 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 107 314 - -
Phco3g01402 423 FunFam Leucine-rich repeat receptor-like protein kinase 7 106 - -
Phco3g01402 423 Pfam Protein tyrosine and serine/threonine kinase 36 244 IPR001245 GO:0004672|GO:0006468
Phco3g01402 423 PANTHER OS07G0107800 PROTEIN-RELATED 15 309 - -
Phco3g01402 423 ProSitePatterns Protein kinases ATP-binding region signature. 37 60 IPR017441 GO:0005524
Phco3g01402 423 SUPERFAMILY Protein kinase-like (PK-like) 11 300 IPR011009 -
Phco3g01402 423 CDD STKc_IRAK 37 302 - -
Phco3g01402 423 ProSitePatterns Serine/Threonine protein kinases active-site signature. 151 163 IPR008271 GO:0004672|GO:0006468
Phco3g01402 423 Gene3D Transferase(Phosphotransferase) domain 1 107 325 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01402 Phco-Chr3 14321440 14327433 Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Phco3g01402 PK_Tyr_Ser-Thr 1.9e-46 CL0016