Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01356 ATGAATATGGAAAAGTTAGCGATTATAATCACTGGCAGAGATGGGAGCCCTCTGGAGGACATTGAAGGTGAATACTGGAGAATAATAGAGCAACCAACTAATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGATCACTTGGAAGTGGCTTTCCTAAGACATCATCCTTAACTAAGAATGATTCAGACAGGAGTTCTAGTTCCATGGCTGGATGTTGGAATGTGCTTTTCCTCATTCTGCTGGGTATGGTATGGAGTACCTGGAACCCTTGCTCCAGTTTGGAAGATGCAATGAGAAAGCACTGGCCTGATTTATTTGAAGAACAACCAAATCTACTCAATGAATTGGTGACTCAATTATCTCCTTCAATTCTTAAATGTGAGGGGGTGCCTGTACATCTCACTGTTCAGAATTCAGGTGAATTTATTATTAACTTTCCAAGGGCGTTCCACTGTGGCTTCAATTGCGCAGAGGCTGTAAACGTGGCTCCTGTTGATTGGCTTGTGCATGGCCAGAATGCTGTTGAGCTTTATAGTTTGCAGTGCCGTAAGACTTCATTGTCCCATGACAAGTTATTATTTGGATGTGCTCAGGAAGCCGTGTGTGCCCTTGCAGAGCTGGCTCTTAATGAAAAGAAAATCTAA 651 0.4286 MNMEKLAIIITGRDGSPLEDIEGEYWRIIEQPTNEVEVYYGADLETGSLGSGFPKTSSLTKNDSDRSSSSMAGCWNVLFLILLGMVWSTWNPCSSLEDAMRKHWPDLFEEQPNLLNELVTQLSPSILKCEGVPVHLTVQNSGEFIINFPRAFHCGFNCAEAVNVAPVDWLVHGQNAVELYSLQCRKTSLSHDKLLFGCAQEAVCALAELALNEKKI 216
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01356 216 PANTHER LYSINE-SPECIFIC DEMETHYLASE 17 86 - -
Phco3g01356 216 SMART cupin_9 2 181 IPR003347 -
Phco3g01356 216 Gene3D Cupin 9 83 - -
Phco3g01356 216 Gene3D Cupin 91 215 - -
Phco3g01356 216 Pfam JmjC domain, hydroxylase 94 165 IPR003347 -
Phco3g01356 216 SUPERFAMILY Clavaminate synthase-like 77 202 - -
Phco3g01356 216 ProSiteProfiles JmjC domain profile. 20 181 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01356 Phco-Chr3 13455820 13458408 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Phco3g01356 JmjC 1.2e-14 CL0029