Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01351 ATGCCTCCGCCGCAGCCTCGTCGTGTCGACCCCAAAATCTGGAGGGCATGCGCCGGCGCCGCTGTGCACATCCCGAAGCTGCATTCTAGGGTTTACTACTTCCCTCAGGGACACATGGAGCACGCCTCTCCCTCACATTCGCTCTCCCCTGCCTTCCGTTCCCCTCCATTTGTTCCCTGCCACGTGTCCTCCCGTGATTTGCTCGCTGATCCATTCTCCGACGAGGTCTTCGCCAAGCTCCTCCTCACTCCCCTCCCTCACCCCTTCCACCATAACCAGAACGAAGACAGCAACAGCCAAAACGACGACGAAGACGAGCGCGACTGCCAAAACGGCGTCGTTTCGTTCTCCAAAATCCTCACGCCCTCCGATGCCAACAACGGCGGGGGGTTCTCCGTGCCGCGCTTCTGTGCGGACTCCGTCTTCCCTCCGCTCGATTTCCGCGCCGATCCTCCCGTCCAGCTTCTCTCCGTCACCGACGTCCACGGCGTCGCGTGGCGGTTCCGCCACATCTACCGTGGCACTCCACGTCGGCACCTCTTCACCACCGGCTGGAGCAAGTTCGTTAACCACAAGAAGCTCATCGCCGGAGATTCCGTCGTCTTCGTCAAGGACTCCGACGGGAACGTCTCAGTCGGGATCCGCCGTGCTACGCGCTTCGTCTCCTCTTCCTCTCTTGTGGAGGCGGAGCAGCCGCCGGCGCAGGGGGAGGGGTTTTCGCGGAGCGCGATAGGGAGAGTATCGCCGAAGGCGGTGGCGGCCGCGGCGGAGTGCGTGGCGCGGAACGCGCCGTTTGAGGTTGTGTATTATCCGAAGGCGGGTTTTGCGGATTTTGTGGTGAGTGCTGAGGTTGTGGAGGACGCAATGAAGTGCGCGTGGGTTAGTGGAATGAGAGTGAAGATAGGAATGGAGACTGAGGATTCTTCTAGGATGACGTGGTTTCAAGGGACGGTGACTTCTGCCTATGCCTCTGATAATGGACCTTGGCGCATGCTTCAGGTTAACTGGGATGAACCTGAAGTCTTGCAGAATGCAAAGCGAGTCAGTCCTTGGCAGGTTGAACTTGTTTCCCCCTCACTTGCACTTCATCCCGCCTTTTCCCCTTCAAAAAGGTTTAGAGCTGACCAGGGTTCTGGACTGTTAAGTGATAGGGAGGGAGACCCCTTCTTTCCTGTGACAGGTTTCCCTAACTCAACAATGGGAAACATGGATAAGAGATTGTTGAGTTACGATACTTTTCCTGCTGGCATGCAGGGAGCCAGGCATGATCTATTTTCTGCATCAAGTTTTTCCAACTTTTTAAATGATAACTCTTATATGTACATGGGTAGTACTTCCTTTGGGAACAATACAGTGCAAAGTTTGGGAATTGTTTCAACAGAGCTAAACATGAGCAGTTCTCAATCAGATGACCTGTCACCACATAGCCAGAGTAGTTTACATTCCTTTGACACAGAGTTTACTGGGACCCGGCAGTGCAACACCAAAGTTGGTTCTGGTTCAATCCTGCTATTTGGTAAGATCATACAGCCTGCTGAAACTCATTTGCATGATGCTGCTGATTACATGGAACGTGATGGCAGCAGGGGCAGCAAAGAAACTGAAGACAGTTGA 1614 0.5446 MPPPQPRRVDPKIWRACAGAAVHIPKLHSRVYYFPQGHMEHASPSHSLSPAFRSPPFVPCHVSSRDLLADPFSDEVFAKLLLTPLPHPFHHNQNEDSNSQNDDEDERDCQNGVVSFSKILTPSDANNGGGFSVPRFCADSVFPPLDFRADPPVQLLSVTDVHGVAWRFRHIYRGTPRRHLFTTGWSKFVNHKKLIAGDSVVFVKDSDGNVSVGIRRATRFVSSSSLVEAEQPPAQGEGFSRSAIGRVSPKAVAAAAECVARNAPFEVVYYPKAGFADFVVSAEVVEDAMKCAWVSGMRVKIGMETEDSSRMTWFQGTVTSAYASDNGPWRMLQVNWDEPEVLQNAKRVSPWQVELVSPSLALHPAFSPSKRFRADQGSGLLSDREGDPFFPVTGFPNSTMGNMDKRLLSYDTFPAGMQGARHDLFSASSFSNFLNDNSYMYMGSTSFGNNTVQSLGIVSTELNMSSSQSDDLSPHSQSSLHSFDTEFTGTRQCNTKVGSGSILLFGKIIQPAETHLHDAADYMERDGSRGSKETEDS 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01351 537 SUPERFAMILY DNA-binding pseudobarrel domain 110 223 IPR015300 -
Phco3g01351 537 SMART B3_2 116 218 IPR003340 GO:0003677
Phco3g01351 537 CDD B3_DNA 115 216 IPR003340 GO:0003677
Phco3g01351 537 Gene3D - 113 218 IPR015300 -
Phco3g01351 537 Pfam B3 DNA binding domain 116 217 IPR003340 GO:0003677
Phco3g01351 537 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 8 510 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco3g01351 537 FunFam Auxin response factor 114 218 - -
Phco3g01351 537 Pfam Auxin response factor 255 330 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco3g01351 537 ProSiteProfiles B3 DNA-binding domain profile. 116 218 IPR003340 GO:0003677
Phco3g01351 537 Gene3D - 293 360 - -
Phco3g01351 537 MobiDBLite consensus disorder prediction 88 108 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01351 Phco-Chr3 13363712 13366658 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco3g01351 B3 2e-20 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01351 3 13363712 13366658 Phco3g01351 3 13363712 13366658 ECH
Phco3g01351 3 13363712 13366658 Phco7g01190 7 10308708 10311651 PCT