Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01346 ATGGATAGTGTATGGTGGAGTGGATTGAAAGAAGCCATGATAGGAAAAGAAAATGCAGATGAGGTTAAACTACTTATACTTTTGGTTTCTGTTCTAAACTGTGTTTGGATTTCCCAGTATATGAACTCTTCATCGACTCAACTAGTCCTCGTGAAAAGGATGGGTATATATGATCCATTCCATCAAGTGAACATGTGGGGGGACAGCTTTAAAATTGATGGAAGCTTGAATTCAATTGCTACGCCAATGTTCATGACGAAGTCTAGCATGCAGAACAAGTCGGAATGTACTCCTCATGAATCAAGGGAACCTTCTGGAGATGATCAAGAGACTAATGAGAAAGCTGATAGTAAGGTGCTAAGACGTCAAGCTCAAAATCGTGAGGCTGCACGAAAATGTCGGCTGCGGAAGAAGGCTTATGTTCAGCAATTAGAAACAAGTTGTATGAAGCTTATGCAATTGGAATTGGAGATTGAGAAAGCAAAAAAGCAGAGTATGTACATACGCAGTGCACCAGATGTTAGTTATATGGGATCATCCGGAACAATTAACCCAGGGATAACCTTGTTTGAACTCAAATATGGACAATGGATTGAAGAGCTCTATAGACAAAATGAAGAACTAAGAAATGCATTACAAACTCGTGAATCTGATATGCAGCTTCATCTACTTGTTGAGAGTTGCTTGAGCCACTACTCAAATCTTTTCAGGATGAAAGCAGAGGCAGCAAAAGCCGATGTCTTTTATTTGATCTCTGGTGCATGGAAAGCATCAGTGGAACGCCTTTTTCTTTGGATTGGAGGATCCCGTCCATCGCAGCTTCTAAATATTATTGTACCACAGCTTGAGCCTTTGAATGATCAACAAATTGTGAGTATTAACAACCTTCGACTTTCGTCTCAGCAAGCTGAAGATGCCCTTTCACTTGGATTGGACAAACTCCAACAGAGTCTAGTCCACAACATTCCATCAGATCCCTTAGTTATAGGGCACTACGGGTTTGAGATGGCTGCTGCCATGGACAAAGGTGAAGCACTAGAAGGTTTCGTAAACCAGGCAGATCACCTTAGGCAGCAAACTCTGCTTTACATGTCAAGGATTCTAACAACTGGCCAAGCAGCTCAAGGCTTGCTGGCTATGGGGGAATACTTCCACCGTCTTCGCACTCTTAGTTCTTTATGGACAGCTCATTCATGTGATCCTTCCTTTCCCCCTCATCTCTCAAACTGA 1230 0.4211 MDSVWWSGLKEAMIGKENADEVKLLILLVSVLNCVWISQYMNSSSTQLVLVKRMGIYDPFHQVNMWGDSFKIDGSLNSIATPMFMTKSSMQNKSECTPHESREPSGDDQETNEKADSKVLRRQAQNREAARKCRLRKKAYVQQLETSCMKLMQLELEIEKAKKQSMYIRSAPDVSYMGSSGTINPGITLFELKYGQWIEELYRQNEELRNALQTRESDMQLHLLVESCLSHYSNLFRMKAEAAKADVFYLISGAWKASVERLFLWIGGSRPSQLLNIIVPQLEPLNDQQIVSINNLRLSSQQAEDALSLGLDKLQQSLVHNIPSDPLVIGHYGFEMAAAMDKGEALEGFVNQADHLRQQTLLYMSRILTTGQAAQGLLAMGEYFHRLRTLSSLWTAHSCDPSFPPHLSN 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01346 409 Coils Coil 198 218 - -
Phco3g01346 409 Pfam Seed dormancy control 206 279 IPR025422 GO:0006351|GO:0043565
Phco3g01346 409 Coils Coil 144 164 - -
Phco3g01346 409 SMART brlzneu 113 174 IPR004827 GO:0003700|GO:0006355
Phco3g01346 409 Pfam bZIP transcription factor 117 169 IPR004827 GO:0003700|GO:0006355
Phco3g01346 409 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 116 151 IPR004827 GO:0003700|GO:0006355
Phco3g01346 409 FunFam BZIP family transcription factor 117 166 - -
Phco3g01346 409 Gene3D - 117 170 - -
Phco3g01346 409 SUPERFAMILY Leucine zipper domain 119 152 IPR046347 GO:0003700|GO:0006355
Phco3g01346 409 ProSiteProfiles DOG1 domain profile. 187 397 IPR025422 GO:0006351|GO:0043565
Phco3g01346 409 PANTHER TRANSCRIPTION FACTOR TGA9 42 398 - -
Phco3g01346 409 MobiDBLite consensus disorder prediction 96 123 - -
Phco3g01346 409 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 121 136 IPR004827 GO:0003700|GO:0006355
Phco3g01346 409 MobiDBLite consensus disorder prediction 89 123 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01346 Phco-Chr3 13278949 13284981 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco3g01346 DOG1 1.8e-27 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01346 3 13278949 13284981 Phco7g01182 7 10257120 10259867 PCT