Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01345 ATGGCTAGAAGGATTATGGGTTTCTCTCCTAATAGAGCCCAGGATCCACAGTACCCACCTATGGTTAGACAAAGCTCTTTATACAACCTCACCTTTGATGAGGTTGAGAGCCAGTTGGGAAACACAGAGAAGCCTATTCATGGTATGTCCTTGGATGAGTTTCACAAAAGTGTTATCTCAGCTGAAAGTGGACAACTTGTGCAAACTTCATCTGATCATCATTCATTTACTCTTGGGAACATGAGCAATGGTATGCATGACACCAAAAATGGCTTTAGTGAGGGTTGGAGGGGAATTGTTGACCACGAACATATGAACAGGTGTGTAGACACCCTCTTGAAACAACCTACTCTAGGGGAATCATCTTTGGAACATTTACTAGCTAATAATGCAGCTGATCAGAATGCTAACGTTCACACTCCAACCCCGATGGTAATTGATCCAATACATCAACAACATTGGTTGCAAATTCCTTCCATTAACACCCACCAATCTCATCATGAGCCACAGATAATTGGAAATTCTCAAGATTTCAATGTTTCTAAGTCATTCTACGATAGCCAACTTAGTTATTCAGAAAATTCAGTGGGGGTTTCACTGTCTCCTTCCTATTCAGATTCTAAGAGTCCTCTTTTTGGGAAGAGAAAGCACTCAAACGAGACGCTGGAAAAGGCTGTGGAAAGAAGACAAAAGAGGATGGCTAAGAACAGGGAATCTGCAGCAAGATCAAGGGCGAAGAAGCAGGAACACATACATGGATTAGAGAACGAGAAGTGTCGCCTTCAGAAAGTGAATAGCTGGCTCAAACAGCTGAAGGTTTTTCATTTGTTCATTGATGATAGTTGTTGTGCTTTGGTCATGGCCATCTGCATTTGGATAAGGTTCAGTAAGATCCGCTCCTTCCCATGTCTTCTCTGCATACTTGTTATCAGTGCCAACAACATTGTCCTTTCTGCATCTCCCTTAGGTGCATCTCCTGTGTTCTTGCCTACTTCTATTCAACTCCTTTCTCTGTTGTGA 1020 0.4225 MARRIMGFSPNRAQDPQYPPMVRQSSLYNLTFDEVESQLGNTEKPIHGMSLDEFHKSVISAESGQLVQTSSDHHSFTLGNMSNGMHDTKNGFSEGWRGIVDHEHMNRCVDTLLKQPTLGESSLEHLLANNAADQNANVHTPTPMVIDPIHQQHWLQIPSINTHQSHHEPQIIGNSQDFNVSKSFYDSQLSYSENSVGVSLSPSYSDSKSPLFGKRKHSNETLEKAVERRQKRMAKNRESAARSRAKKQEHIHGLENEKCRLQKVNSWLKQLKVFHLFIDDSCCALVMAICIWIRFSKIRSFPCLLCILVISANNIVLSASPLGASPVFLPTSIQLLSLL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01345 339 PANTHER CAMP-RESPONSE ELEMENT BINDING PROTEIN-RELATED 22 271 IPR043452 GO:0003700|GO:0045893
Phco3g01345 339 SMART brlzneu 224 287 IPR004827 GO:0003700|GO:0006355
Phco3g01345 339 MobiDBLite consensus disorder prediction 1 20 - -
Phco3g01345 339 Pfam Basic region leucine zipper 227 270 IPR004827 GO:0003700|GO:0006355
Phco3g01345 339 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 226 270 IPR004827 GO:0003700|GO:0006355
Phco3g01345 339 Gene3D - 226 275 - -
Phco3g01345 339 SUPERFAMILY Leucine zipper domain 228 270 IPR046347 GO:0003700|GO:0006355
Phco3g01345 339 CDD bZIP_plant_BZIP46 228 273 - -
Phco3g01345 339 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 231 246 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01345 Phco-Chr3 13264917 13267381 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Phco3g01345 bZIP_1 4.7e-07 CL0018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01345 3 13264917 13267381 Phco3g01345 3 13264917 13267381 ECH