Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01329 ATGGGTCGTGTTAAACTCGAGATAAAGAGAATAGAGAACCCCACCAATCGACAAGTTACATTCTCAAAGCGAAGAAATGGCCTCATCAAGAAAGCCTACGAGCTTTCAATCCTCTGTGACATTGATATTGCCGTCATAATGTTTTCTCCCTCCGGTCGTGTCAACCACTTTTCCGGTAGAAGGAGAATTGAGGATGTTTTTACTCGCTACATTAATCTTCCTGACCAAGAAAGAGATAATGCTGTAAGTTTTCCAGAGCTACCGTACCGCAGGGGTATTCAGAATAAGGAGTATTTGCTTAGGACACTTCAGCAACTGAGGAGTGAAAATGACATAGCTCTTCAACTGGCCAATCCGGGAGACATTAACTCTGAGATTGAGGAACTCCAACAAGAAGTTAATAGGCTACAACAGCAACTTCAAATGGCCGAAGAGCAGATAAGGTTATATGAACCCGACCCATTAAAGATGTCATCAATGGCAGATCTTGAAAACAGTGAAAAACACCTTGTAGATGTCTTGACACGAGTCATGCAAAGAAAGGAATACTTAATGAGCCACCATTTATCTTCGTTTGATCCATCTAGTATTCAGGGAATACCAACCTCTTTCGACAATGTAGGTTGGTTGCAGGATGGCAGTCAAAATCATGCTCAGATATTTGATGGATCTGCTCCTATAGATCCTCTCAGGGACTTATCTTCCACCGTGTATGGTTCATTTTCTCAAGGAACAAGTTCAAACGCTGATCCACGAGGTATGGGGGAATGCCACGTGTCAAATCCAAGTGATGGGACCCTTCAAGCATGGCCTCAAGGGTACACATTATATCCTCATCATCATATTCAGCATGACATGGTGGGACCCGACATGCCAGATATGATGCCACATGCACAGGTGAACATACCAATCACTGCCTCACACGTGGAACCACCACCCAAGAACGAACCTGGAGAATATGACCAGTCTAAACAACAACAACCTCATCCTCATCCTCATCCTCATCCTCATCCTCAGCAGCTTAATGCCCAATGA 1035 0.4386 MGRVKLEIKRIENPTNRQVTFSKRRNGLIKKAYELSILCDIDIAVIMFSPSGRVNHFSGRRRIEDVFTRYINLPDQERDNAVSFPELPYRRGIQNKEYLLRTLQQLRSENDIALQLANPGDINSEIEELQQEVNRLQQQLQMAEEQIRLYEPDPLKMSSMADLENSEKHLVDVLTRVMQRKEYLMSHHLSSFDPSSIQGIPTSFDNVGWLQDGSQNHAQIFDGSAPIDPLRDLSSTVYGSFSQGTSSNADPRGMGECHVSNPSDGTLQAWPQGYTLYPHHHIQHDMVGPDMPDMMPHAQVNIPITASHVEPPPKNEPGEYDQSKQQQPHPHPHPHPHPQQLNAQ 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01329 344 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Phco3g01329 344 MobiDBLite consensus disorder prediction 238 264 - -
Phco3g01329 344 MobiDBLite consensus disorder prediction 306 344 - -
Phco3g01329 344 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Phco3g01329 344 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Phco3g01329 344 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Phco3g01329 344 Coils Coil 119 153 - -
Phco3g01329 344 CDD MADS_MEF2_like 2 75 IPR033896 GO:0000977|GO:0045944
Phco3g01329 344 Gene3D - 14 86 IPR036879 GO:0003677|GO:0046983
Phco3g01329 344 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Phco3g01329 344 FunFam MADS-box transcription factor 41 13 92 - -
Phco3g01329 344 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 313 - -
Phco3g01329 344 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Phco3g01329 344 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Phco3g01329 344 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01329 Phco-Chr3 12860455 12865907 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco3g01329 SRF-TF 5.8e-26 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01329 3 12860455 12865907 Phco3g01329 3 12860455 12865907 ECH