Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01283 ATGGTCATATGGAGAGGGATGGTGTTACTGGTGATGTTCTTGCTGTTTGTAGTCCAACAAATATGTGCTAGGAATGAGCAAGAGCATGCTATGGATTGTCCCACTTCTTCCTGCGGGAAAATCACAAACATAAGTCGGCCATTCAGGTTGAAACGTGATCCAATATATTGCGGCGACAGCAGGTACGAACTGGATTGTGAAAATAATGTTACGGTTTTATATTTGTACTCGGGAAAATATCATGTGCAGGCAATAAACTACAATAATTTCACAATTCGAGTGGTTGATCCGGGAGTTGAAGAACCAAGTTGCTCCTCCCTTCCTCGCTATTTCTTGTCGAAATCCAATTTCAGTCATGCTTATCATGTTGACGCCGTGGCTCCATACCGAACCACTCAAAACCAATTCTCTGATGAATTGGGTAATTACGAGAAGAGTCTTTTGAAGCACATAATTTACTTGAATTGTAGCCATCCAGTGAGTGAGAAGAATAAGTACGTGAATACTGCTCCGTGTGTGAAGTGGCAGTCGAAGGGCTACATGTATGCCGTCGCTGCAGGTGACTTAACAGCAGCGGAGCTTAAAGTTGGTTGTGGTGTAAAGCTGGTGTCTCCGACGTCTTGGTGGGGTTTGGACGCAAATGAATCTTCCTACACTGATATGAACAGGGCGTTACTTTATGGATTTGAGATGTCGTGGTTGCATTTCGCCTGTGACGATCAATGTCCAAGCTCAACTTATGGCGAATGCTCTTTCAACTCTTCAATCTCTAAGCTTCAATGCTCGCTCTGCGACGATATGTTATTCGGACGATTGCTAGTTCCTTGTGTACTGTTGGACACAATACAAGGAAACCTAAGATTTGGAGTAAACTACTACTTTGATCCGGTATCGTTTATTATAGGACGCTATGTTCTTCCATTTTTTTTGACAGTCAGATTTTTGTTTGGGATGACATTACTTATTGTGCTTTTGGTATACAAATGGAGGAAAAGGCATTTGTCAATATATGAAAATATTGAAAATTATCTAGAACATAATAACTTGATGCCTATTAGATACTCATACAAGGAAATCAAGAAGATGGTGAAAGGTTTCAAAGAAAAATTGGGTGAAGGAGGCTATGGCTCTGTGTTTAAGGGAAAGTTGTCTAGTGGATCTTGTGTGGCAATAAAAATGTTAGGTAAATCAAAAGGAAGTGGACAAGACTTTATAAGTGAAGTTGCTACCATTGGAAGAATACATCATCAAAATGTAGTACAATTAATTGGATTCTGTGTTGAAGGTTCGAAACGTGCTCTTGTTTATGAATTCATGTCTAATGGATCTCTTGATAAAATTATTTTTTCTAAAGATAAAAGTATAGAATTTGGCAATGACAAAATATACAATATAGCAATTGGGGTAGCTCGTGGGATTGCTTATCTCCACCATGGATGTGAGATGCAAATTTTGCATTTTGATATAAAACCCCATAATATTCTACTTGATGATAAATTCATTCCAAAGGTCTCTGATTTTGGATTGGCAAAGTTATATCCGGTAGATAATAGCGTTGTCACCATGACAACAGTAGGAGGAACAATTGGATATATGGCTCCAGAATTATTTTATAAAAATATTGGGGGAATATCCTATAAGTCTGATGTTTATAGTTTTGGAATGCTTTTAATGGAGATGGCAAGCAGGAGGAAAAACTTAAATCCACATGTAGAGCATTCAAGCCAAATTTATTTTCCCTCTTGGATTTATGATTACATTAGAGAAGAGAAAGATATAGAAATGGAAGAAATGGAAGAATTCACAGAGGAGGAAAAGAAAATAGTAAAGAAGATGATCATAGTTGCATTTTGGTGTATACAAATGAATCCAAATGATCGTCCCTCCATGAACAAAGTAGTGGAAATGCTTGAAGGAGACATTGAAAAATTGGAAATCCCTCCAAATTTTTCTTTATATCCATATGAAGCGACAGAAAACTCTAAACAAACAATAGCAACTGAATTTACTTGTTCTTCTAGTTATTCTTTGGAAATTGATTAA 2043 0.3735 MVIWRGMVLLVMFLLFVVQQICARNEQEHAMDCPTSSCGKITNISRPFRLKRDPIYCGDSRYELDCENNVTVLYLYSGKYHVQAINYNNFTIRVVDPGVEEPSCSSLPRYFLSKSNFSHAYHVDAVAPYRTTQNQFSDELGNYEKSLLKHIIYLNCSHPVSEKNKYVNTAPCVKWQSKGYMYAVAAGDLTAAELKVGCGVKLVSPTSWWGLDANESSYTDMNRALLYGFEMSWLHFACDDQCPSSTYGECSFNSSISKLQCSLCDDMLFGRLLVPCVLLDTIQGNLRFGVNYYFDPVSFIIGRYVLPFFLTVRFLFGMTLLIVLLVYKWRKRHLSIYENIENYLEHNNLMPIRYSYKEIKKMVKGFKEKLGEGGYGSVFKGKLSSGSCVAIKMLGKSKGSGQDFISEVATIGRIHHQNVVQLIGFCVEGSKRALVYEFMSNGSLDKIIFSKDKSIEFGNDKIYNIAIGVARGIAYLHHGCEMQILHFDIKPHNILLDDKFIPKVSDFGLAKLYPVDNSVVTMTTVGGTIGYMAPELFYKNIGGISYKSDVYSFGMLLMEMASRRKNLNPHVEHSSQIYFPSWIYDYIREEKDIEMEEMEEFTEEEKKIVKKMIIVAFWCIQMNPNDRPSMNKVVEMLEGDIEKLEIPPNFSLYPYEATENSKQTIATEFTCSSSYSLEID 680
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01283 680 SUPERFAMILY Protein kinase-like (PK-like) 349 638 IPR011009 -
Phco3g01283 680 ProSitePatterns Protein kinases ATP-binding region signature. 370 392 IPR017441 GO:0005524
Phco3g01283 680 PANTHER RUST RESISTANCE KINASE LR10-RELATED 337 657 IPR045874 GO:0004672
Phco3g01283 680 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Phco3g01283 680 Gene3D Phosphorylase Kinase; domain 1 338 438 - -
Phco3g01283 680 FunFam PR5-like receptor kinase 439 648 - -
Phco3g01283 680 FunFam serine/threonine-protein kinase PBS1-like 334 438 - -
Phco3g01283 680 Gene3D Transferase(Phosphotransferase) domain 1 439 646 - -
Phco3g01283 680 ProSiteProfiles Protein kinase domain profile. 364 650 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01283 680 Pfam Protein kinase domain 367 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01283 680 Pfam Wall-associated receptor kinase galacturonan-binding 33 96 IPR025287 GO:0030247
Phco3g01283 680 SMART serkin_6 364 637 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01283 Phco-Chr3 11981324 11984946 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Phco3g01283 Pkinase 1.8e-49 CL0016