LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Phco3g01282	ATGATCTCCTGTCCGATTTTCGCTACTGATTCTGAAGCAAGTGTCTTGGAATGGGACCTTACATTCTGTTCTAAGATGTCCGATGTCACTGCACCTGTCTCGGCATTCGATATGCTGCAGAGTGAATTCATGTTGACATGGTCCAAACCAGCTTGTACTGCGTGCGAAGCTGAAGGTAAAAGATGTAAATGGAAGAACAACAGCACCGAAGTTATCGAATGTTTGGATTGCTATGACCACAAGGGCCTCCATAAAAGAATCACAAATTTCAGATCTTTTATATTTTCCTGTACTGTTATCGTAGGTTCAATTCTTTTGGGCCTGCTGGCCATTGTGGCTTTTAAGATTTTCCGCTATTTTAGAGAGAAGGAAGAAGACCAAGCAAGAGTGGACAAGTTCTTAGAGGATTACAGAGCAGAAAAGCCTACAAGAGTTACATACGCCGATGTCAAGAGAATCACCGATGGTTTTAAAGAAAAACTAGGGGAAGGAGCTCATGGAGCTGTTTTCAAAGGCAAACTTTCGAATGAGATTCTCGTGGCTGTGAAGATTATCAATAATACTGAAGGAGATGGGAATGAGTTCATCAATGAAGTAGAAATTATGGGAAAAATCCACCACATTCACGTGGTTCGTTTGCTAGGCTTTTGCGCCGAAGGAATCCATCGTGCTCTTGTCTACAATTTGTTTCCAAAGGGTTCACTGCAAAGCTTCATATTTCCACCCGATGACAAGGACCATTTCCTTGGGTGGGAGAAGATGCAACAGATTGCTCTTGGTATAGCTAAAGGGATTGAGTATCTCCATCAAGGTTGTAATCATCCCATTATTCACTTTGACATCAATCCTCGCAATGTGTTACTTGAAGACAACTTCATTCCAAAGATTTCTGATTTTGGATTAGCCAAATTGTGTTTCAAGAATCCAAGTTTGGTGTCCATGACAGCTGCTAGGGGAACCTTGGGATACATTGCACCGGAAGTTTTCTCCAGGAACTTCGGAAATGTATCCTACAAGTCTGATATTTACAGTTATGGAATGTTGTTGCTAGAAATGGTTGGAGGAAGGAAGAATGTAGACATGTCATCCTCAGAAAATATCCATGTTCTGTACCCAGATTGGATCCATAACCTTGTTGACGGAGACATACATATCCATATTGAGTATGAAGGTGATGTTAAAATTGCAAAGAAGCTAGCCATTGTTGGACTTTGGTGCATTCAGTGGTAG	1230	0.413	MISCPIFATDSEASVLEWDLTFCSKMSDVTAPVSAFDMLQSEFMLTWSKPACTACEAEGKRCKWKNNSTEVIECLDCYDHKGLHKRITNFRSFIFSCTVIVGSILLGLLAIVAFKIFRYFREKEEDQARVDKFLEDYRAEKPTRVTYADVKRITDGFKEKLGEGAHGAVFKGKLSNEILVAVKIINNTEGDGNEFINEVEIMGKIHHIHVVRLLGFCAEGIHRALVYNLFPKGSLQSFIFPPDDKDHFLGWEKMQQIALGIAKGIEYLHQGCNHPIIHFDINPRNVLLEDNFIPKISDFGLAKLCFKNPSLVSMTAARGTLGYIAPEVFSRNFGNVSYKSDIYSYGMLLLEMVGGRKNVDMSSSENIHVLYPDWIHNLVDGDIHIHIEYEGDVKIAKKLAIVGLWCIQW	409

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Phco3g01282	409	Pfam	Protein tyrosine and serine/threonine kinase	157	361	IPR001245	GO:0004672\|GO:0006468
	Phco3g01282	409	PANTHER	RUST RESISTANCE KINASE LR10-RELATED	127	409	IPR045874	GO:0004672
	Phco3g01282	409	ProSitePatterns	Protein kinases ATP-binding region signature.	161	183	IPR017441	GO:0005524
	Phco3g01282	409	FunFam	serine/threonine-protein kinase PBS1-like	121	229	-	-
	Phco3g01282	409	Gene3D	Phosphorylase Kinase; domain 1	128	229	-	-
	Phco3g01282	409	Gene3D	Transferase(Phosphotransferase) domain 1	230	409	-	-
	Phco3g01282	409	FunFam	Os07g0541700 protein	230	320	-	-
	Phco3g01282	409	SUPERFAMILY	Protein kinase-like (PK-like)	139	379	IPR011009	-
	Phco3g01282	409	ProSiteProfiles	Protein kinase domain profile.	155	409	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Phco3g01282	Phco-Chr3	11978934	11980239	Tandem

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRK10L-2	Phco3g01282		PK_Tyr_Ser-Thr	6.7e-43	CL0016