Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01272 ATGGAGCGCTATGAGATTCTCAAAGATATTGGCTCTGGGAATTTTGCTGTGGCCAAACTGGTTAGGGACAACTGCACCAATGAGCTTTTTGCTGTCAAGTTTATTGAGAGAGGCCAGAAGATTGATGAGCATGTCCAGAGGGAAATCATGAACCATAGATCATTGAAGCATCCCAATATTATTAGATTCAAAGAGGTCCTGCTGACACCGACTCATCTAGCAATAGTAATGGAGTATGCTTCTGGAGGAGAACTATTTGAGAGGATATGCAATGCTGGTAGATTCAGTGAGGATGAGGCAAGATTTTTCTTTCAGCAATTGATATCTGGAGTAAGTTACTGTCATTCAATGCAAATTTGTCATAGAGATCTGAAGCTTGAAAACACTCTCTTAGATGGAAGCACTGCACCACGAGTTAAAATTTGTGACTTTGGTTACTCAAAGTCATCAGTATTGCATTCTCAACCTAAGTCAACGGTAGGAACTCCAGCTTATATTGCACCTGAGGTTCTTACAAGGAAAGAATATGATGGAAAGATTGCAGATGTATGGTCTTGTGGAGTCACCTTATATGTGATGTTAGTTGGGGCTTATCCTTTTGAAGACCCTGCAGACCCAAGAAACTTCAAAAAAACCATTGGTAAGATACTTAGTGTCCAGTACTCAGTCCCCGATTATGTACGAGTTTCCTTGGAATGTAGACATCTTCTATCACAAATATTTGTGGCAAGTCCTGAAAAGAGAATAACAATACCAGAAATTAAAAACCACCCATGGTTTTTAAGGAACTTACCCATAGAACTGATGGAAAGTGGAAGCTGGCAAATAAATGATGTAAATAATCCATCACAAAGTGTTGAGGAAGTCCTGTCTATAGTACAAGAGGCAAGAAAATCTCTTAACGTTCCCATTGTTGGGGGCCTTCTTAGGGGCACCATGGACCTGGATGACTTGGATGCTGATGAAGAAGATCTTGAAGATGTAGAAACAAGTGGAGAATTTGTGTGTCCTCTTTAA 1017 0.4012 MERYEILKDIGSGNFAVAKLVRDNCTNELFAVKFIERGQKIDEHVQREIMNHRSLKHPNIIRFKEVLLTPTHLAIVMEYASGGELFERICNAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSTAPRVKICDFGYSKSSVLHSQPKSTVGTPAYIAPEVLTRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPADPRNFKKTIGKILSVQYSVPDYVRVSLECRHLLSQIFVASPEKRITIPEIKNHPWFLRNLPIELMESGSWQINDVNNPSQSVEEVLSIVQEARKSLNVPIVGGLLRGTMDLDDLDADEEDLEDVETSGEFVCPL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01272 338 SMART serkin_6 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01272 338 ProSiteProfiles Protein kinase domain profile. 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01272 338 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Phco3g01272 338 SUPERFAMILY Protein kinase-like (PK-like) 2 279 IPR011009 -
Phco3g01272 338 Gene3D Phosphorylase Kinase; domain 1 1 79 - -
Phco3g01272 338 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Phco3g01272 338 FunFam Serine/threonine-protein kinase SRK2E 80 268 - -
Phco3g01272 338 CDD STKc_SnRK2 3 259 - -
Phco3g01272 338 Pfam Protein kinase domain 4 260 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01272 338 Gene3D Transferase(Phosphotransferase) domain 1 80 267 - -
Phco3g01272 338 FunFam Serine/threonine-protein kinase SAPK2 1 79 - -
Phco3g01272 338 PANTHER SERINE/THREONINE KINASE 2 280 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01272 Phco-Chr3 11760191 11763142 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Phco3g01272 Pkinase 4.4e-71 CL0016