Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01257 ATGGCCCTAGAGGCCGTGGTTTTCCCTCAAGATCCATTCACTTATCCTTGCAACAAAGACTACTTCTACTCGCTATTACAAAACAATTTCCAACAAGTAGAAAACAAAGCCTTTGTAGGAATCATCACCAATAACATAGACCACACTCTCCATGCAAATTGGGATTCTTCTTCCCCTTCAGCTTTGCAAAATGTCAAAGACCAATGGGACTCACACTCCTCCCCTGAACCCTGCACCGTCGATCAATCTCTCCCCGCCGCTTTTCCTCCTCCTCCTCCCTCCTCCACCGAACCCACCACCGCCCGCCGCAAACGCCGCCGCACCAAGAGCACCAAAAACAAAGAGGAGATCGAGAATCAAAGAATGACCCACATTGCAGTTGAACGCAATCGAAGGAAACAGATGAACGAGTACCTCACAGTTCTAAGATCCTTGATGCCACCGTCTTATGTCCAAAGGGGTGATCAAGCATCTATTATTGGTGGCGCCATTAACTTCGTGAAGGAGCTGGAGCAGCTTCTGCAGTGCATGAAGGGGCAGCAGAAAACAAAGGAAAATGGTGGTCGCTTTTCTGACCCATCACCCTTTGCTGAGTTCTTCATGTTCCCTCAGTACTCCACACGTGCGACACGGAATAGCAGAGGCTACCCTAGCACGTGCGAAGCACGGAACCATTCATGGGCCGTGGCAGACATAGAAGTGACCCTGGTGGATGGCCATGCCAACATAAAGATACTCACCAAGAAACTGCCAGGCTTGCTTCTGAAGATGGTTGTTGGCCTTCAAACTCTTGCCTTCACCATTCTCCACCTTAATGTTACCACTGTTGAGGATATGGTCCTTACCTCGGTTAGTGTCAAGGTAGAGGAAGGGAGTGAGGCGAAGACAGTGGACGAAATTGCAGGTGCTGTGCATGAATTATACCGGAGGATCCAGGAGGAAGATGTTTTGAGCTGA 957 0.4932 MALEAVVFPQDPFTYPCNKDYFYSLLQNNFQQVENKAFVGIITNNIDHTLHANWDSSSPSALQNVKDQWDSHSSPEPCTVDQSLPAAFPPPPPSSTEPTTARRKRRRTKSTKNKEEIENQRMTHIAVERNRRKQMNEYLTVLRSLMPPSYVQRGDQASIIGGAINFVKELEQLLQCMKGQQKTKENGGRFSDPSPFAEFFMFPQYSTRATRNSRGYPSTCEARNHSWAVADIEVTLVDGHANIKILTKKLPGLLLKMVVGLQTLAFTILHLNVTTVEDMVLTSVSVKVEEGSEAKTVDEIAGAVHELYRRIQEEDVLS 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01257 318 PANTHER MAX DIMERIZATION, MAD 70 314 - -
Phco3g01257 318 FunFam Basic helix-loop-helix transcription factor 110 185 - -
Phco3g01257 318 Pfam Helix-loop-helix DNA-binding domain 120 171 IPR011598 GO:0046983
Phco3g01257 318 SMART finulus 125 176 IPR011598 GO:0046983
Phco3g01257 318 CDD bHLH_AtFAMA_like 122 185 - -
Phco3g01257 318 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 119 170 IPR011598 GO:0046983
Phco3g01257 318 MobiDBLite consensus disorder prediction 57 80 - -
Phco3g01257 318 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 119 182 IPR036638 GO:0046983
Phco3g01257 318 Gene3D - 109 189 IPR036638 GO:0046983
Phco3g01257 318 MobiDBLite consensus disorder prediction 57 117 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01257 Phco-Chr3 11527210 11528746 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco3g01257 HLH 1.4e-09 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01257 3 11527210 11528746 Phco3g01257 3 11527210 11528746 ECH
Phco3g01257 3 11527210 11528746 Phco7g01088 7 9181321 9183442 PCT