Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01239 ATGTCATGTCCTGTCGGAGAAGGAGGGCACGTAGGCAGCTCCCATAAATGCAGACAGATTAATTGGTCCGATGTTAAGTCCGGAGAGAAGGTGGATAGAGATATGGAATTTGACGACCAAGAGGAGCAGGAGGAGGAAATGGGGATGCCGGAGCCGCCGGTGCCCGCGCCGGTGGCAAGTTACGACTCTCTTGGGAACTCGGCGGCGCGCTCGAAAGTTGGAGGCGAAGGACGGAAGGGCGCGTTCGGCGCCGGGGCGGTACGGTACCGAGAATGCCAGAAGAACCACGCCGTGAGCTTCGGCGGCCACGCCGTCGACGGCTGCTGCGAGTTCATGCCGGCCGGAGAGGACGGCACTCTGGAGGCCGTGATTTGCGCCGCCTGCAACTGCCACCGGAATTTTCACCGCAAGGAGATCGACGGCGAGATGGCCTCCTTCCACCACCGCGCGCAGCCGCCGCCGCCGCTTCACCACCACCATCAATTCTCCCCGTACTACCACCACCGAGTCCCGCAGCACCCCGCCGCCGCTGGCTACCTCCACCACCACCTAGCCACGCCTCCAATGGCGCAGCACCGCCCACTCGCCCTCCCTGCGGCGGCCTCCGGCGGTGGACTCAGCCGCGAAGACGAAGACATCTCGAATCCGAGCAGCAGCGGAGGCGGTGGAGGCGGCGGCGGCGGCGGCGGGGGATCCAAAAAACGGTTCCGAACGAAGTTCACGCAGGAACAGAAGGATAAGATGCTGGCATTCGCGGAACAGCTAGGGTGGAGAATCCAGAAGCACGATGAATCTGCGGTGGAACAGTTCTGTGCTGAGACCAATGTGGAGCGAAAAGTTCTGAAAGTTTGGATGCACAATAACAAGAACACTCTCGGTAAGAAACCCTAA 891 0.6162 MSCPVGEGGHVGSSHKCRQINWSDVKSGEKVDRDMEFDDQEEQEEEMGMPEPPVPAPVASYDSLGNSAARSKVGGEGRKGAFGAGAVRYRECQKNHAVSFGGHAVDGCCEFMPAGEDGTLEAVICAACNCHRNFHRKEIDGEMASFHHRAQPPPPLHHHHQFSPYYHHRVPQHPAAAGYLHHHLATPPMAQHRPLALPAAASGGGLSREDEDISNPSSSGGGGGGGGGGGGSKKRFRTKFTQEQKDKMLAFAEQLGWRIQKHDESAVEQFCAETNVERKVLKVWMHNNKNTLGKKP 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01239 296 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 88 139 IPR006456 -
Phco3g01239 296 FunFam Zinc-finger homeodomain protein 2 227 294 - -
Phco3g01239 296 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 89 138 IPR006456 -
Phco3g01239 296 NCBIfam homeobox domain, ZF-HD class 233 290 IPR006455 -
Phco3g01239 296 Gene3D - 218 293 - -
Phco3g01239 296 Pfam ZF-HD protein dimerisation region 87 139 IPR006456 -
Phco3g01239 296 MobiDBLite consensus disorder prediction 199 235 - -
Phco3g01239 296 MobiDBLite consensus disorder prediction 23 61 - -
Phco3g01239 296 SUPERFAMILY Homeodomain-like 218 294 IPR009057 -
Phco3g01239 296 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 71 292 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01239 Phco-Chr3 11216804 11218501 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Phco3g01239 ZF-HD_dimer 2.6e-28 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01239 3 11216804 11218501 Phco3g01239 3 11216804 11218501 ECH
Phco3g01239 3 11216804 11218501 Phco7g01048 7 8645195 8646388 PCT