Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01217 ATGCTTCCCTTTCGGAGATTCTACGGGTTCCAGAGTTGGCTAGACCACGACTCTACCCACGTCCCCAACTCGTTGATTAAAAGGGCAGTGGAGTTCGACGGCGCCAGATCAAAAACGGAGCGCAAATCAACGGAAGCATGCAAGAGTCACAGGGAAGCCGAGAGGAGACGCAGGCAGAGAATCAACTCCCACCTCTCCACCTTACGTTCCCTCCTCCCTAACGCCGCCAAGTCGGATAAAGCGTCGTTGCTGGCGGAAGTTGTTGAGCACGTGAAACGGTTAAGGAAGCAGGCCAATGACGTGGCGTGCGCGGACGGTGGCGAACCGGGTGCGGTTCGGTCTGAGGCGTGGCCGCTTCCCGGGGAGTGCGACGAGGCGACGGTGAGTTTGTGCGAGGGGGAGGCGCGGCGGGTGAAGGCGACGGTGTGCTGTGAGGACCGGGTCGGTCTGAACCGGGACGTGACACGGGCAATCCGGTCGGTTCGGGCAAAGCCGGTTCGAGCGGAAATGATGACGGTTGGGGGAAGGACGAAGAGTGTGGTGGTGGTGGAGTGGGGTGAAGAGGAGGTGGAGGGAAAGGAGGCTGGGGCGCTGGAACGGGCTTTGAAGGCCGTGGTAGAGAATCGGGCTTTGGTGGGCTTTGGAATGGGCCCCGTTGTTTTGGGCCAGAAAAGGGGTAGGGATTCTTGCGGTTCGCCTAGTTCTTGTTGA 711 0.602 MLPFRRFYGFQSWLDHDSTHVPNSLIKRAVEFDGARSKTERKSTEACKSHREAERRRRQRINSHLSTLRSLLPNAAKSDKASLLAEVVEHVKRLRKQANDVACADGGEPGAVRSEAWPLPGECDEATVSLCEGEARRVKATVCCEDRVGLNRDVTRAIRSVRAKPVRAEMMTVGGRTKSVVVVEWGEEEVEGKEAGALERALKAVVENRALVGFGMGPVVLGQKRGRDSCGSPSSC 236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01217 236 Pfam Helix-loop-helix DNA-binding domain 47 94 IPR011598 GO:0046983
Phco3g01217 236 Gene3D - 39 102 IPR036638 GO:0046983
Phco3g01217 236 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 48 100 IPR036638 GO:0046983
Phco3g01217 236 MobiDBLite consensus disorder prediction 37 57 - -
Phco3g01217 236 SMART finulus 51 100 IPR011598 GO:0046983
Phco3g01217 236 PANTHER TRANSCRIPTION FACTOR BHLH30 31 227 IPR045847 GO:0003700|GO:0006355
Phco3g01217 236 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 45 94 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01217 Phco-Chr3 10815750 10816735 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco3g01217 HLH 8.7e-13 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01217 3 10815750 10816735 Phco3g01217 3 10815750 10816735 ECH