Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01200 ATGGACCCACCTGCAATGTACGGACACTCCCAGCCCCTGAACATGCCTCCGCAGATCTCCGCCGCCGAAAGCGACGATGGCTCCGGCCCCGACCCCGCCCTCGACGCCCACCACCACATTCACTACGAAACTCGCGCGCTCGAAGACGGTGCAACCGGTGCCATGGTCGTTGTTGAGGATGTCACTTCGGATGCGGTCTATGTCTCCGGCGGTGGAGGGCCCGAAGAGTCTAGCCAGCTTACGCTGTCGTTTCGTGGCCAAGTTTACGTCTTCGATGCCGTTACGCCTGATAAGGTTCAAGCGGTGTTGTTACTGTTGGGTGGATGTGAACTGTCTTCTAGTGGTTCGCCATGTGTAGATGTGGTGCCTCAACAGAATCAGAGGGGTTCAATGGAATATCCTGCAAGATGTAGTCTACCACAGCGAGCTGCCTCGTTAGATAGGTTCAGGCAGAAGAGGAAAGAGCGATGCTTTGATAAAAAAGTGAGATATAGTGTACGGCAAGAAGTTGCGCTCAGGATGCACCGCAATAAGGGGCAATTCACTTCTTCTAAGAAACAAGATGGAACTAATAGTTATGGTACAGACCAAGATTCAGGACAGGATGATAGTCAATCAGAAACCTCATGCACACATTGTGGCATTAGTTCAAAATCCACCCCAATGATGCGGCGAGGGCCGTCTGGTCCAAGGTCACTATGCAATGCTTGTGGGCTTTTTTGGGCAAACAGGGGTGCTTTGAGAGACCTTTCCAAGAGAAATCATGAACACTCTCTTGCACCAATTGAGCAGGTTGATGAAGGTAACGACTCAGATTGTCGAACTGCTGCCAACCCTGCACATAACAATCTCGCTCACGCTGCATACTCAGAGCATGATCATCCTGCTTTGGTAGCTGATCGTAAAGTTTTCCAGTCCCAGAAAATGCTGGAGTAG 936 0.5107 MDPPAMYGHSQPLNMPPQISAAESDDGSGPDPALDAHHHIHYETRALEDGATGAMVVVEDVTSDAVYVSGGGGPEESSQLTLSFRGQVYVFDAVTPDKVQAVLLLLGGCELSSSGSPCVDVVPQQNQRGSMEYPARCSLPQRAASLDRFRQKRKERCFDKKVRYSVRQEVALRMHRNKGQFTSSKKQDGTNSYGTDQDSGQDDSQSETSCTHCGISSKSTPMMRRGPSGPRSLCNACGLFWANRGALRDLSKRNHEHSLAPIEQVDEGNDSDCRTAANPAHNNLAHAAYSEHDHPALVADRKVFQSQKMLE 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01200 311 SMART GATA_3 204 257 IPR000679 GO:0006355|GO:0043565
Phco3g01200 311 ProSiteProfiles GATA-type zinc finger domain profile. 204 253 IPR000679 GO:0006355|GO:0043565
Phco3g01200 311 ProSitePatterns GATA-type zinc finger domain. 210 237 IPR000679 GO:0006355|GO:0043565
Phco3g01200 311 ProSiteProfiles Tify domain profile. 73 108 IPR010399 -
Phco3g01200 311 Pfam CCT motif 142 184 IPR010402 GO:0005515
Phco3g01200 311 CDD ZnF_GATA 209 254 IPR000679 GO:0006355|GO:0043565
Phco3g01200 311 MobiDBLite consensus disorder prediction 183 223 - -
Phco3g01200 311 Gene3D - 200 259 IPR013088 GO:0006355|GO:0008270
Phco3g01200 311 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 206 258 - -
Phco3g01200 311 ProSiteProfiles CCT domain profile. 142 184 IPR010402 GO:0005515
Phco3g01200 311 Pfam GATA zinc finger 210 245 IPR000679 GO:0006355|GO:0043565
Phco3g01200 311 MobiDBLite consensus disorder prediction 175 228 - -
Phco3g01200 311 SMART tify_2 73 108 IPR010399 -
Phco3g01200 311 PANTHER GATA TRANSCRIPTION FACTOR 28 7 282 IPR045280 GO:0006355
Phco3g01200 311 MobiDBLite consensus disorder prediction 1 35 - -
Phco3g01200 311 Pfam tify domain 74 107 IPR010399 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01200 Phco-Chr3 10587937 10591737 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Phco3g01200 CCT 2.4e-15 CL0281
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01200 3 10587937 10591737 Phco3g01200 3 10587937 10591737 ECH
Phco3g01200 3 10587937 10591737 Phco7g01072 7 8932820 8937246 PCT