Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01189 ATGCGTATTCGTAGCTCCACGCGTCAGCGTAGCAACGGTGGCTGCCACGCCTTTCGAGGAACATATAAAACAAGGGAATCTGATTGGGCCACGTGCAGCTTCAGGAAAACCAGTAGTGGTTTCGCTGGCCACATAAGCGGGTTTGGTATGGGGAGAGGAAAGATCGTGATAAGGAGGATCGACAATTCGACGAGTAGGCAAGTCACGTTCTCGAAGCGAAGGAACGGTTTGCTGAAGAAGGCGAAGGAGCTTGCGATCTTGTGCGATGCTGAAGTCGGAGTTATGATTTTCTCCAGCACCGGAAAACTCTACGATTTCGCCAGCTCCAGCATGAAATCGGTAATTGACCGATACAATAAATCAAAAGAAGAAAATTTTCAACTTGGGAGTTCAACCTCTGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTAAGGCAGCAATTACACAATTTGCAAGAAAGTCACCGCAAAATCATGGGGGAAGAACTGTCAGGTTTGACAGTCAAAGAATTACAAAATTTGGAGAAGCAATTAGAAATAAGCCTTCGTGGTGTCCGTATGAAAAAGGATCAACTTTTAATGGATGAAATACAAGAACTAAATCGAAAGGCAAACCTCATGCGCCAAGAAAATGTGGAACTGTATAAGAAGGTAAATCTAATTTCTCAAGAAAACAAGGAATTGAAAAAGAAGGTCTATGGAACAAAAGATGATAGCGAAACAAACAGAGATTATGTTCTGACAAATGGTCTAGGCATAGGAGAGGATTTGCAATTGCCCGTGAATCTCCAGCTAAGCCAGCCACAGCAACAACACTACAAGGCTACTTCAGGAATTGCGAAATTGGGGTATGATCTTTCGATCATTTTAACTAGTACACCAATAATCATGATGCAAAAGCATTGA 909 0.4257 MRIRSSTRQRSNGGCHAFRGTYKTRESDWATCSFRKTSSGFAGHISGFGMGRGKIVIRRIDNSTSRQVTFSKRRNGLLKKAKELAILCDAEVGVMIFSSTGKLYDFASSSMKSVIDRYNKSKEENFQLGSSTSEIKFWQREAAMLRQQLHNLQESHRKIMGEELSGLTVKELQNLEKQLEISLRGVRMKKDQLLMDEIQELNRKANLMRQENVELYKKVNLISQENKELKKKVYGTKDDSETNRDYVLTNGLGIGEDLQLPVNLQLSQPQQQHYKATSGIAKLGYDLSIILTSTPIIMMQKH 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01189 302 CDD MADS_MEF2_like 51 123 IPR033896 GO:0000977|GO:0045944
Phco3g01189 302 ProSitePatterns MADS-box domain signature. 52 106 IPR002100 GO:0003677|GO:0046983
Phco3g01189 302 ProSiteProfiles K-box domain profile. 135 225 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco3g01189 302 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 59 106 IPR002100 GO:0003677|GO:0046983
Phco3g01189 302 SUPERFAMILY SRF-like 51 138 IPR036879 GO:0003677|GO:0046983
Phco3g01189 302 ProSiteProfiles MADS-box domain profile. 50 110 IPR002100 GO:0003677|GO:0046983
Phco3g01189 302 PRINTS MADS domain signature 87 108 IPR002100 GO:0003677|GO:0046983
Phco3g01189 302 PRINTS MADS domain signature 72 87 IPR002100 GO:0003677|GO:0046983
Phco3g01189 302 PRINTS MADS domain signature 52 72 IPR002100 GO:0003677|GO:0046983
Phco3g01189 302 Coils Coil 135 155 - -
Phco3g01189 302 SMART madsneu2 50 109 IPR002100 GO:0003677|GO:0046983
Phco3g01189 302 Coils Coil 191 232 - -
Phco3g01189 302 Gene3D - 62 132 IPR036879 GO:0003677|GO:0046983
Phco3g01189 302 FunFam MADS-box transcription factor MADS-MC 62 134 - -
Phco3g01189 302 Pfam K-box region 132 219 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco3g01189 302 PANTHER SERUM RESPONSE FACTOR HOMOLOG 52 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01189 Phco-Chr3 10389621 10403978 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco3g01189 K-box 3.1e-26 No_clan