Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01178 ATGGAACTTTATGATCATGATTTCTTGGAGGAATCTACAGCTCTAAGAAGAGAACCATGGGATACCAATCCACGTTCACAAGAAAACCAGCCTTTCTCTAATGCCTGGAGTTTTGATTGTTTTGATCAAAACTATTATCAAGCTTTTCCTTCAAATTCTTTCTCTTTCCAAGAAGTTCCTCGGAGTTACAACTTCGACTATACCTTCAATGAAATCTATAGTTCTTTGCTTGGTGAATTCTCTGCACCCCAAATTGTAGATTCATCTTATAAAACCCTTGATACTTCACATAACACCCCTCCATTTGTGGCTCATGAAGATTATCCACTGTCCATGATGGAAGAAGAAGATCCAGGTTTGCTTGGGGAAGAGCTTCATTGTTTGGACCTTCAAGCCACATGCAAAATGGAGCCAAGCCATTCCCCTGAAAGGCCTGTTTTCAACACAGATTCATGTGTGGAAAGAAAGAATAATAGAGCAAAGAAGCTTCAGGGGCAGCCTTCCAAGAACCTAATGGCAGAGAGGAGAAGAAGGAAGAGATTAAACGACAGGCTCTCCATGCTAAGATCAATTGTCCCAAAGATAAGTAAGATGGACAGAACATCTATACTTGGAGACACTATCGATTACATGAAAGAGCTCTTGGAAAAGATTAACAATTTGAAGCAAGAAATAGAAGTGGATTCCAACACGGCTACCATTTTCAAGGATTCAAAGCCAAACGAACTCTTAGTAAGAAATTCTCCTAAGTTTGATGTGGAGAGGAGAAATGGCAATACAAGGGTGGAGATCTGCTGTGCAGGGAAGCCAGGCTTGTTGGTATCTACAGTAAACACATTGGAAACATTAGGTCTCGAGATCCAGCAATGCGTTATTAGCTGTTTCAATGATTTCACAGTGCAAGCTTCTTGTTCAGAGCAGAAGACAATTCTGAGTTCTGAAGATATAAAACAAGCACTATTTAGAAGTGCAGGATATGGAGGAAGATGTTTGTAA 996 0.4006 MELYDHDFLEESTALRREPWDTNPRSQENQPFSNAWSFDCFDQNYYQAFPSNSFSFQEVPRSYNFDYTFNEIYSSLLGEFSAPQIVDSSYKTLDTSHNTPPFVAHEDYPLSMMEEEDPGLLGEELHCLDLQATCKMEPSHSPERPVFNTDSCVERKNNRAKKLQGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLEKINNLKQEIEVDSNTATIFKDSKPNELLVRNSPKFDVERRNGNTRVEICCAGKPGLLVSTVNTLETLGLEIQQCVISCFNDFTVQASCSEQKTILSSEDIKQALFRSAGYGGRCL 331
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01178 331 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 165 214 IPR011598 GO:0046983
Phco3g01178 331 Pfam Helix-loop-helix DNA-binding domain 171 214 IPR011598 GO:0046983
Phco3g01178 331 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 57 325 - -
Phco3g01178 331 MobiDBLite consensus disorder prediction 154 176 - -
Phco3g01178 331 SMART finulus 171 220 IPR011598 GO:0046983
Phco3g01178 331 Coils Coil 204 231 - -
Phco3g01178 331 Gene3D - 173 247 IPR036638 GO:0046983
Phco3g01178 331 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 227 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01178 Phco-Chr3 10275038 10276503 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco3g01178 HLH 7e-10 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01178 3 10275038 10276503 Phco3g01178 3 10275038 10276503 ECH