Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01165 ATGAACCTTTGTCCTGAAACTGAAAGTGTCTCAGCCCAGAAGAAGAGAGCAATAATGGAAGAGCTTGTTAAGGGTCAGGAAGCTGCTACTCAACTCAGAGTTCTGCTTCATAACCCCTTTGAGACTGAACCCTCTCTCTCTTCTCATCACCTCATAGCCAAGGTGCTCACATCTTTCACACACGCTCTTTCTGTTATCAACTCTTCTCTTCTGCTACCTGGTTCTGCAGATGGGCTGGCTTATCAGAATCTCCTGTTTTCCGGCAAAAATAGGTGGTCTGTGCCCCGATCCAGCAACTGTCCAACAGCTGGAGATTGCAGTGAGAAGAGATCGCAAAAGGGTGGAAGAGGTCGCTACAGTAGAAGAAAGAGTGCACTCACATGGACTGAAGTATCTTGCACTACTGATGACAATCATGCATGGAGGAAGTATGGACAAAAGGAAATAGTGAATTCTCAATTCCCTAGAAAGTGGGAGATTTCAACATCGATTATCAATCAATGTGAAATGTTCTTCTACTCCTCCTCAACAACTCCTTCTTTACCTTTGACATATTCCACTCTAAAAACCCCAAAGCTCTCATTGCGAGCCTCCACCTCCCCTCAAGGACCTCCACAACTCCATGCACCTTTGGAAGCCCTCCTTTCTCACCACTTCACTTTCTTGTATACTGTATTGGTTCTAACAATAACCAATAGAGTTACTTCAGGTGCAGTCATAAGTATGACCAAGGTTGCCAAGCCACAAAACAAGTGCAGAGGAATCAAGAGATCCCCAATTAGCTCACCAACCTTAACTATAAAACAAGAATTTCCCAAAGATCTTACAGATCACAAGCCATTGGAGCCTAGTCTGCTGTCAGATTTTTGA 870 0.4414 MNLCPETESVSAQKKRAIMEELVKGQEAATQLRVLLHNPFETEPSLSSHHLIAKVLTSFTHALSVINSSLLLPGSADGLAYQNLLFSGKNRWSVPRSSNCPTAGDCSEKRSQKGGRGRYSRRKSALTWTEVSCTTDDNHAWRKYGQKEIVNSQFPRKWEISTSIINQCEMFFYSSSTTPSLPLTYSTLKTPKLSLRASTSPQGPPQLHAPLEALLSHHFTFLYTVLVLTITNRVTSGAVISMTKVAKPQNKCRGIKRSPISSPTLTIKQEFPKDLTDHKPLEPSLLSDF 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01165 289 Pfam WRKY DNA -binding domain 136 157 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g01165 289 ProSiteProfiles WRKY domain profile. 136 163 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g01165 289 MobiDBLite consensus disorder prediction 271 289 - -
Phco3g01165 289 SUPERFAMILY WRKY DNA-binding domain 133 158 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g01165 289 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 20 157 IPR044810 GO:0003700
Phco3g01165 289 SMART WRKY_cls 135 170 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g01165 289 MobiDBLite consensus disorder prediction 97 121 - -
Phco3g01165 289 MobiDBLite consensus disorder prediction 269 289 - -
Phco3g01165 289 Gene3D WRKY domain 119 180 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01165 Phco-Chr3 10064381 10072332 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco3g01165 WRKY 1.2e-05 CL0274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01165 3 10064381 10072332 Phco3g01165 3 10064381 10072332 ECH
Phco3g01165 3 10064381 10072332 Phco7g01581 7 15078137 15080438 PCT