Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01159 ATGGGTAGGCGAAAAAGCAAACCAAATCGAGCAGGCGGGATAATACTTGAGACAGATGCTTCTGCTGAGACAGAATTGAATAAACAAAATGTTGTAGAAAGAGGGGAAGAAGCAAAAGGTAGTTTTGGTGGCATCGATAAGCCTTATTTTGTGGAGGTTGCTCGGTTGGATTGGTTGTCGAGTGAACACCTTGATATTTCTGAGGTTGTTTTGAGGGATTTAAAATTGAGTGAAGGTTTTGCTGGTTTTGAATTGTCTGAGGATTTTTGTCGGGATCAGCAGTACTTGTTAAGATTTCGAGTATGTAATGTCAGTAATGTTCTTGGTCGAATCAAATTAGGCCATTGGCCTGTGTTGCCCTATACTGATATTCATCTAGAGTTTGCAAGAAGAGTTACCGTTGACCATGTGGAAACATGTACAGTGTTGTTATCTGGTGTTTTTGACGGACCTGATGAAGGTGTTACTGGTCTTCTTCACTTGGCAAGTTTGAAGTTTGTTACACTGAGGCCAGTTCTTGGGGTGAGGCTTTCTGAGGAAATTTCCTCGCTGAGGGTAAGGGTTGAGGTATTAAAGAGCGCCTTTAATGCGTGTGAGTCTCTTATTGATACTTCTAGACAACTATGGAAAAAGAGTATGGTAAATGTAATGTCTTGGTTGCGTCCAGAAATAATGGCTTCGGAAGTTAGGTATGGGTTGTTTAGCTGTAAGAAAATGGATGGTGATCCACAGACAGAGATGGTAGATGACACTTGCAAGGCAAGGAAACATGCGAGATTTGATCCTGCAGGTTTATATGAAGCCATTAAGCCTTCAAAAGCTGAGCCAATGCTTGAAGATGACATACCAGAGTTACTTCCTAAATTGAGGCCATATCAAAGGCGTGCAGCTTTCTGGATGGTAGAAAGAGAGAAAGCAGTGGAAGAAAGTCTGGGTGAAAGAGAAAGAAATCAGTTTCATTCTCCATTATGCATACCTGTGGATTTTCTGGACACCAGTTCTCAAATGTTTTTCAATCCATTCAGTGGAAATATTTCATTGTACCCAGAGACTTCTTCGCCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGAAAAACTGTTGAATTGCTTGCTTGCATCTTTACTCATCGCAGATCAGCATCTGGAAGTGACATATTATTTGATTTAGAGCCACAAATTGACGGGGATCAAAAAGTCACTTTGAAAAGAGTCAAAAGAGATCGTGTGGAGTGCATGTGTGGAGCTGTGAGCGAAAGTCTTAAATATGAAGGACTATGGGTTCAGTGTGACATTTGTGATGCTTGGCAGCATGCGGATTGTGTTGGTTATTCACCTAAAGGAAAATCTTTGAAATCGAAACAAGGATGTGAAAGCAAGACATATAAAACTACCATGGCTGTGAGGGATGGAGAATATGTATGTCATATATGCTCTGAACTAATTCAAGCTACTGAATCTCCTATTGCCTCTGGCGCCACTCTCATTGTCTGCCCAGCTCCTATTTTGCCCCAGTGGCGTGATGAAATTATACGCCATACACATCAGGGCTCCTTGAAAACTTGTGTCTACGAAGGTGTGCGAGAAACATCCTTTTCCAATACGTCTGTGATGGATATCAGTGATCTTGCCAGTGCTGACATTGTATTAACTACATATGATGTGCTTAAAGAGGATCTGTCGCATGATTCTGATAGGCATGTAGGTGATCGACACTTTCTGAGGTTTCAAAAAAGGTACCCTGTCATCCCAACTCTTCTTACGAGAATATACTGGTGGAGGATTTGCTTGGATGAGGCACAAATGGTGGAAAGTAATAGTACAGCTTCCACTGAAATGGCTCTAAGACTCCATTCAAAGTATCGATGGTGCATTACTGGTACCCCAATTCAGCGAAAACTTGATGACTTGTATGGACTTCTAAGGTTTCTTGTGGCCAGTCCTTTTGATAAATACAGGTGGTGGACTGATGTTATTCGAGATCCTTATGAGAAGGGAGATGTGCGAGCTACGGAATTTACACACAAAGTTTTCAAACAAATCATGTGGCGTTCTTCTAAAAAACATGTTGCAGATGAATTGGACCTTCCATCCCAAGAGGAGTGCCTTTCTTGGCTTACACTCTCACCAGTAGAGGAGCACTTTTACCAGAGGCAACATGAAACTTGTGTTAGAGATGCCCATGAAGTTATTGAAAGTTTGAGAAATGATATTCTTAATAGACAAGGCCCAGATTCTATCTCTTTGCAAAGTTCCTCTGATCCTTTAATCACTCACACCGAGGCAGGGAAGCTACTGAATGCTTTGCTGAAGCTTCGTCAAGCTTGTTGTCATCCCCAGGTTGGAAGTTCTGGGTTGCGCTCCCTACAACAAACACCAATGACTATGGAAGAAATACTAATGGTTCTTATAAGCAAGACCAAGATAGAAGGTGAGGAAGCTCTCAGGAAGTTAGTTATTGCTTTGAATGCGCTTGCAGCTATTGCTGCAATACAACAGGATTTTTCTCAAGCTACATCACTGTACAGTGAAGCTCTTACTTTGGCTGGAGAGCATTCTGAAGATTTTCGCCTGGATCCTTTGTTAAATATCCACATTCATCATAATCTTGCTGAAATACTGCCACTTGCTTCAAACTTTGCATTAATATTGGCATCCAAAGGAAAACATTTATCTGAAAGTTCTGAATTTAAGATGACCAAAAGGCATTTAATTGTAAAGGTTGACAGTTGTCATGTGAAGAGGCAAAAAATAAGTGGTTGTGATGAAGTAAATGTAACCGTGCCGTCTGCAGAACTATCAAATGTTAGCCTTTCAGAAAATGACACAAAGGAGGATCAGGAATTTGATAATTTATCTGCCAATTCTGTCAAATCTCTAATAGCAGAATGTGAAGATTCAAAACAGAAATACTTATCTGTCTTCAATTCAAAGCTATCTGCAGCCCAACAGGAGTTTCAAAGTTCTTACATTCAGGTCAGTAACGCTTATCGTGACAGTAGAACAGATCAAAATACATTTTGGTGGTTAGAAGCACTCCATCATGCTGAACAGAGCAAAGATTTCTCTACTGAGTTGATTAGAAAGATTGAAGAAGCCATCTCAGGAGCTTCAAGCAATTCAAAGTCGTCAAGAATAACTGCTCGTTTCCGAAGCATAAGCTCTTTAAAGTATCAAATTCAGACAGGTTTGGATCAGTTAGAGGCCTCTAGAAAAACACTACTAGATCGACTGTTAGAAATTGATCAGACAATGGAAAAACCAAAAGAAGAAGATATTGAACGTGTGGGTAAATGTCAAAATTGCCAGCCTAATTGTGATGGTCCCCCGTGTATTTTGTGCGAACTAGATGGATTGTTTCAGGATTATGAAGCAAGACTCTTCATTCTTAAGAATGAACGTGGAGGAATAATTTCATCTGCTGAGGAGGCAGTAGACTTTCAGAAGAAAAATGTTGCACTGAATCATTTCCTCTCAAAGCTATCACAATCTAGTAACAGTTCTACAACATCTGATATTGGTCATGAGGAATCAAAGAAAAGGAATGTTGGACAAAGAGTAGTGGTTTCAAGATCAGCATCTGAGTTGGAGCTAATTCTTGGAGTTATAAAGAACTACTGCAAGGCTCGATTAGGAAGGGACTCTGTGTCAGCTGCCACCAAGGATTTACATGTTTTTGAGGGAATGCGAAAGGAGTTTGGCCATGCAAGGTCTTTGGCATTAGCTCAAGCTCAGTATCTGCGTGCACATGATGAAATACAGATGGCTGTTTCCCGTCTGCACCTAAGGGCAAGCGAAGATGATAAATCTCTCGATGCTTTAGGTGAAAATGAATTAGTTGCAGCTAGCTCCAACTTTTCCCATGAAAAGTTTATGTCATTGACCATGTTGTCCCAGACGAAAGGAAAACTCCGTTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAAATGCAATTTGTAAGTCCAAACAGTTCTTCATTCACACGAGAAACAACTGCAATGTCAAACTCTACAGAAGAGAAGGCTGTACTTATAGCTAAAACTGATGATGAAACATGCCCAGTCTGCCAAGAAAAGCTAGGCAATCAGAAGATGGTTTTTCAATGTGGGCATGTTACATGCTGTAAATGTTTATTTGCTATGACTGAGAAAAGACTTCAGAATAGCAAGGTTCATAATTGGGTGATGTGCCCTACATGTCGGCAGCATACTGACTTTGGAAACATTGCCTATGCTGTTGAATCACCGAATGAATCTTCCAATCTTTCAGTGCTGCATACGATTGACAGCAGTGAAAAGTGTGAAGCATCCATTAGCGTCAAAGGATCATACGGAACTAAGATTGAAGCAGTCACAAGAAGAATCTTGTGGGTAAAGGCTAATGATCATAAAGCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAGCATGCCTTTACTGCCAATAACATTACCTTCATCCGGATGAAGGGAGGCAGAAAAGCACATGTTGCCATCAGTCAATTTAGAGGAAAAGAGAATGATACAAAAGGATGTGAGGGGTCAACACCAAAATCTATTCAGGTGTTGTTGCTTTTAATCCAACATGGTGCGAATGGACTCAATCTCTTGGAAGCGCAACATGTGGTTCTTGTAGAGCCATTGCTAAATCCAGCTGCTGAAGCACAAGCAATTAGTCGTGTACATCGGATTGGACAAAAACATAAGACTCTCATTCATCGTTTCATTGTAAAAGACACGGTTGAAGAGAGTTTATATAAATTGAACAGAAGCAGGAGCAATCATTCATTCATCAGTGGAAACACTAAAAATCAAGATCAACCTGTTTTGACCCTGAAGGATGTGGAAGCCTTGCTGTCTAGAGCACCACTTACTATGCCAGAAAGTGAAGAAAATCTTGGCACAAACACAAATCTTAGACACTTGCCACCATCAGTAGCCGCTGCTATAGCTGCTGAGAAGAGACTTAATGAACAAAGGACATGA 5010 0.4052 MGRRKSKPNRAGGIILETDASAETELNKQNVVERGEEAKGSFGGIDKPYFVEVARLDWLSSEHLDISEVVLRDLKLSEGFAGFELSEDFCRDQQYLLRFRVCNVSNVLGRIKLGHWPVLPYTDIHLEFARRVTVDHVETCTVLLSGVFDGPDEGVTGLLHLASLKFVTLRPVLGVRLSEEISSLRVRVEVLKSAFNACESLIDTSRQLWKKSMVNVMSWLRPEIMASEVRYGLFSCKKMDGDPQTEMVDDTCKARKHARFDPAGLYEAIKPSKAEPMLEDDIPELLPKLRPYQRRAAFWMVEREKAVEESLGERERNQFHSPLCIPVDFLDTSSQMFFNPFSGNISLYPETSSPYVFGGILADEMGLGKTVELLACIFTHRRSASGSDILFDLEPQIDGDQKVTLKRVKRDRVECMCGAVSESLKYEGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGCESKTYKTTMAVRDGEYVCHICSELIQATESPIASGATLIVCPAPILPQWRDEIIRHTHQGSLKTCVYEGVRETSFSNTSVMDISDLASADIVLTTYDVLKEDLSHDSDRHVGDRHFLRFQKRYPVIPTLLTRIYWWRICLDEAQMVESNSTASTEMALRLHSKYRWCITGTPIQRKLDDLYGLLRFLVASPFDKYRWWTDVIRDPYEKGDVRATEFTHKVFKQIMWRSSKKHVADELDLPSQEECLSWLTLSPVEEHFYQRQHETCVRDAHEVIESLRNDILNRQGPDSISLQSSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSLQQTPMTMEEILMVLISKTKIEGEEALRKLVIALNALAAIAAIQQDFSQATSLYSEALTLAGEHSEDFRLDPLLNIHIHHNLAEILPLASNFALILASKGKHLSESSEFKMTKRHLIVKVDSCHVKRQKISGCDEVNVTVPSAELSNVSLSENDTKEDQEFDNLSANSVKSLIAECEDSKQKYLSVFNSKLSAAQQEFQSSYIQVSNAYRDSRTDQNTFWWLEALHHAEQSKDFSTELIRKIEEAISGASSNSKSSRITARFRSISSLKYQIQTGLDQLEASRKTLLDRLLEIDQTMEKPKEEDIERVGKCQNCQPNCDGPPCILCELDGLFQDYEARLFILKNERGGIISSAEEAVDFQKKNVALNHFLSKLSQSSNSSTTSDIGHEESKKRNVGQRVVVSRSASELELILGVIKNYCKARLGRDSVSAATKDLHVFEGMRKEFGHARSLALAQAQYLRAHDEIQMAVSRLHLRASEDDKSLDALGENELVAASSNFSHEKFMSLTMLSQTKGKLRYLKGLVQSKQKMQFVSPNSSSFTRETTAMSNSTEEKAVLIAKTDDETCPVCQEKLGNQKMVFQCGHVTCCKCLFAMTEKRLQNSKVHNWVMCPTCRQHTDFGNIAYAVESPNESSNLSVLHTIDSSEKCEASISVKGSYGTKIEAVTRRILWVKANDHKAKVLVFSSWNDVLDVLEHAFTANNITFIRMKGGRKAHVAISQFRGKENDTKGCEGSTPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKHKTLIHRFIVKDTVEESLYKLNRSRSNHSFISGNTKNQDQPVLTLKDVEALLSRAPLTMPESEENLGTNTNLRHLPPSVAAAIAAEKRLNEQRT 1669
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01159 1669 CDD SF2_C_SNF 1447 1584 - -
Phco3g01159 1669 Pfam SNF2-related domain 292 784 IPR000330 GO:0005524|GO:0140658
Phco3g01159 1669 SUPERFAMILY RING/U-box 1351 1408 - -
Phco3g01159 1669 Gene3D - 1416 1652 IPR027417 -
Phco3g01159 1669 SMART ring_2 1356 1403 IPR001841 -
Phco3g01159 1669 SMART helicmild6 1481 1573 IPR001650 -
Phco3g01159 1669 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1453 1624 IPR001650 -
Phco3g01159 1669 CDD DEXQc_SHPRH 289 688 - -
Phco3g01159 1669 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 32 1668 - -
Phco3g01159 1669 SMART PHD_3 414 482 IPR001965 -
Phco3g01159 1669 Coils Coil 1067 1087 - -
Phco3g01159 1669 Gene3D - 480 709 IPR038718 -
Phco3g01159 1669 Pfam Helicase conserved C-terminal domain 1451 1573 IPR001650 -
Phco3g01159 1669 Gene3D - 345 396 IPR038718 -
Phco3g01159 1669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1336 1415 IPR013083 -
Phco3g01159 1669 ProSitePatterns Zinc finger PHD-type signature. 415 481 IPR019786 -
Phco3g01159 1669 SUPERFAMILY FYVE/PHD zinc finger 411 483 IPR011011 -
Phco3g01159 1669 CDD PHD_TCF19_like 416 460 - -
Phco3g01159 1669 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 408 479 IPR013083 -
Phco3g01159 1669 ProSiteProfiles Zinc finger RING-type profile. 1356 1404 IPR001841 -
Phco3g01159 1669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 274 686 IPR027417 -
Phco3g01159 1669 SMART ultradead3 285 658 IPR014001 -
Phco3g01159 1669 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 594 1624 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01159 Phco-Chr3 10018036 10035458 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco3g01159 SNF2_N 5.7e-87 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01159 3 10018036 10035458 Phco3g01159 3 10018036 10035458 ECH