Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01130 ATGAAAGCAATAAACTTTTCTGGTAGCATAACAAAACCCAGTTTTTTGATTGGCCATTCGGAAATGCCTATTCTAACATTTGGTCATTGTAAGCTGAGTGCTACCCTAGCTTTACGGTTATCTCGTGATTGTATTAGGAGGATGGAGTTGATTACGAAACTTCAGTATTCTGTTGCTGATAGGACATTTAGTTCTGGTTCGGTGTATTCGCCGGCGTCTGAATCAGACTCCGGTAGAATGAATCGTAGGCGGGGAGGTTCCTCATCGATATATAGGCGTCCTAGTTTATCAGAAATGAAGAAAGAGAAGTCTGCAATAAGGGAAAAGGTTTATGAATTCTTGATGTCAATTGGCATTGTTCCTGATGAGCTTGATGGTCTTGAGCTTCCTGTGACTGTTGATGTTATGAGGGAGCGCATAGATTTTCTTCATAGTTTGGGGCTTACAATTGAAGACATCAACAACTATCCACTTGTTCTTGGCTGCAGCGTCAAGAAGAACATGATTCCTGTGCTGGACTATCTTGGTAAATTGGGAGTGAGGGAATCCTCTATTACGTGGTTCTTGCAGAGATACCCGCAAGTTCTCCATGCTAGTGTTGTTGTGGATCTTATGCCGGTGGTAAATTATCTTAAGGGGATGGATATCAAGCCCGAGGATATCCCTCGTGTTCTTGAGAGGTACCCTGAAGTGCTTGGCTTCAAACTTGAGGGAACCATGAGCACATCGGTTGCTTATTTGATTGGAATTGGTGTAGGAAGAAGAGAAATTGGAGGTATCTTAACTAAATTTCCAGAGATTTTGGGGATGCGAGTTGGTAGAATTATCAAGCCTTTTGTGGAGTATATGGAAAGTTTGGGGATTCCAAGGTTAGCCATTGCTAGACTGATAGAGCAACGACCTTATATTCTTGGATTTGGGCTGGATGAGAAGGTGAAACCAAATGTTAAATCCCTTGAAGTGTTTAATGTTAGGCGAACATCACTTCCGTCTATAATTGCTCAGTATCCTGACATCATTGGAACTGACTTAAATTCAAAGCTTGTCAATCAGAGAAGTATACTCAATTCCGTACTTGATTTGGATCCAGAGGACTTTGGCCGAGTTGTTGAGAAGATGCCACATGTAGTTAGCCTCATTAGGGGACCGATGCTGAAGCATGTTGATTTTCTTAAGGATTGTGGCTTTTCATTGCCACAGATGAGGAAGATGATTGTTGCATGCCCTCAATTACTCGCTTTAAACATTGACATCATGAAACTTAGCTTTGATTACTTCCAAATGGAGATGAAAAGGCCTTTGGAAGACTTGGTTACATTCCCTGCATTCTTCACTTATGGTTTGGAGTCAACTATAAAGCCTAGGCATGTGATGGTTGCCAAGAAAGGGTTAAAGTGTTCTCTGTCATGGATGCTTAATTGTTCTAATGAGAAATTTGAGCAACGAATGGACTATGACACTATTGACATGGAAGAAATGGAAATGGAATCATCATTTGACATGAATTCACTAACACAACCAAGGAGTGATGATGAATCAGATTTTGACTATGAAGACAGTGATGAAGATAATGAGTAG 1578 0.4081 MKAINFSGSITKPSFLIGHSEMPILTFGHCKLSATLALRLSRDCIRRMELITKLQYSVADRTFSSGSVYSPASESDSGRMNRRRGGSSSIYRRPSLSEMKKEKSAIREKVYEFLMSIGIVPDELDGLELPVTVDVMRERIDFLHSLGLTIEDINNYPLVLGCSVKKNMIPVLDYLGKLGVRESSITWFLQRYPQVLHASVVVDLMPVVNYLKGMDIKPEDIPRVLERYPEVLGFKLEGTMSTSVAYLIGIGVGRREIGGILTKFPEILGMRVGRIIKPFVEYMESLGIPRLAIARLIEQRPYILGFGLDEKVKPNVKSLEVFNVRRTSLPSIIAQYPDIIGTDLNSKLVNQRSILNSVLDLDPEDFGRVVEKMPHVVSLIRGPMLKHVDFLKDCGFSLPQMRKMIVACPQLLALNIDIMKLSFDYFQMEMKRPLEDLVTFPAFFTYGLESTIKPRHVMVAKKGLKCSLSWMLNCSNEKFEQRMDYDTIDMEEMEMESSFDMNSLTQPRSDDESDFDYEDSDEDNE 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01130 525 Pfam mTERF 172 480 IPR003690 GO:0003690|GO:0006355
Phco3g01130 525 Gene3D Transcription termination factor 3, mitochondrial 267 489 IPR038538 -
Phco3g01130 525 PANTHER CGI-12 PROTEIN-RELATED 172 483 IPR003690 GO:0003690|GO:0006355
Phco3g01130 525 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Phco3g01130 525 SMART mt_12 402 433 IPR003690 GO:0003690|GO:0006355
Phco3g01130 525 SMART mt_12 367 397 IPR003690 GO:0003690|GO:0006355
Phco3g01130 525 SMART mt_12 434 465 IPR003690 GO:0003690|GO:0006355
Phco3g01130 525 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Phco3g01130 525 SMART mt_12 87 120 IPR003690 GO:0003690|GO:0006355
Phco3g01130 525 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Phco3g01130 525 SMART mt_12 330 362 IPR003690 GO:0003690|GO:0006355
Phco3g01130 525 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Phco3g01130 525 SMART mt_12 150 181 IPR003690 GO:0003690|GO:0006355
Phco3g01130 525 FunFam Transcription termination factor mterf4, chloroplastic 136 273 - -
Phco3g01130 525 FunFam Transcription termination factor MTERF4, chloroplastic 274 488 - -
Phco3g01130 525 MobiDBLite consensus disorder prediction 65 93 - -
Phco3g01130 525 MobiDBLite consensus disorder prediction 496 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01130 Phco-Chr3 9726738 9728315 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Phco3g01130 mTERF 1.5e-103 No_clan