Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01127 ATGGGTGCTGTCGTAGAGTGTTACCCGCCGCCGCGCACCGCGATGCTGTCTCTCAACACGCTGCCGTTAGGGTTCCGTTTCCGCCCCACCGATGAAGAGCTTATTGATTACTACCTGCGCTCGAAGATCAACGGAAACGGGGACGATGTTTGGGTTATCCGTGAAATTGATGTCTGCAAATGGGAGCCTTGGGATTTGCCTGATTTGTCGGTGGTACGGAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGATCGGAAGTATCCCAATGGGCACAGGTTGAACCGAGCTACGAGCCTTGGGTATTGGAAAGCAACGGGGAAGGATCGAAGGATTAAGTCTGGTTCCACTTTGATTGGAATGAAGAAGACTCTTGTTTTCTATACTGGTCGTGCACCGAAGGGGAAGAGGACCAATTGGGTTATGCATGAGTACAGGCCTACCCTGAAGGAGCTCGATGGTACCAATCCTGGACAGAATCCGTATGTCCTTTGTCGCTTATTTAAGAAACATGATGAGAGTCTTGAAGCTTCAAATGGTGATGAGGTGGAACGGGCTGCTTCAACCCCTATGACTGCCAATCACTCTCCAGATGAAATACAATCTGATTCCTCTCTGGATCCAGCATCTTCCTCCCAGATTACTGAAGGTGAAAAACCTCTAACAGTTATCCCTGAGAACTCTGAGGAAGTAATATCCAACATTATAACTCCAGTTGACTCCCATAGTGATGAATGTGATGCTCGTGATGCACAAAATCAGATTGTAGAACTAGCTTCAGAGGATCAGGCATTTAACTTTGAGGATTTTTATGACCCAACAAACCAGCAATTAGATGACAAATTATTCTCCCCAGTCCATGCTCATTTCCCACAAGAAATTTACTATCAATCAGAACTTCAGTATGGTACAAATGACAATATGCCCGACCTTTTTGACTCAGTTAATTGGGATGCGATCTCCTATGATGCTAGCAGTCTAGAGCCATGCTCATCCCTCCTCAATGTTAAGGACCATGGATCAGGCAGTGACTCAGATGTGGAAATGGCCAATATGACGAATCCACAGGCATTGCATGGTTATCCTAAGGAGGCAGTTGAGCAGAAGAGCAATGTAGGATTATTTCAGATCAGTCCCGAGATGGATTTCTCAAACGATGGTTCTATGGGCGAGGTGGACTATACGATCAAGAATTGTGGGCAACTAAGTGGGGCCTTTAATAATTGTGGTACTGGAATCAGAATAAGGTCTCGTCAAGGACGAAATGAACAGCCAAACATGAATGGAATGGTACCATCACAAGGGAATGCACCAAGGAGAATAAGATTGGCTGCTGGGCATCCGTTTGCTTCCGAGGAGGCGGCAAAAGATGGAAGTTGTGCTTGTGCCCCAGAAGACCATGATTCAAAAACCATCATTACTAGGGAGTGGAAAGCTTCAGACAACCATGCTGCCAACGAGAGTTCTGCTGTTGCTGATGATGTGGATGAACGAGAGAAGGAATCTCTGGAGTCATCTGACTTAGGAAAGATCACTCGGCAGCATGTTGCAACTGCAGAATCCATCTCAAAAGACCATCTTCAGGTTTTGTCTAACCGTGGCATGTGGTCTTATGTTCTTGGAGTTTCTGCAACTGTGTTGGTTTCAGTAATACTCGTTGTTAATATATGGGCATATGTGAGATCTTAA 1692 0.4586 MGAVVECYPPPRTAMLSLNTLPLGFRFRPTDEELIDYYLRSKINGNGDDVWVIREIDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGHRLNRATSLGYWKATGKDRRIKSGSTLIGMKKTLVFYTGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVLCRLFKKHDESLEASNGDEVERAASTPMTANHSPDEIQSDSSLDPASSSQITEGEKPLTVIPENSEEVISNIITPVDSHSDECDARDAQNQIVELASEDQAFNFEDFYDPTNQQLDDKLFSPVHAHFPQEIYYQSELQYGTNDNMPDLFDSVNWDAISYDASSLEPCSSLLNVKDHGSGSDSDVEMANMTNPQALHGYPKEAVEQKSNVGLFQISPEMDFSNDGSMGEVDYTIKNCGQLSGAFNNCGTGIRIRSRQGRNEQPNMNGMVPSQGNAPRRIRLAAGHPFASEEAAKDGSCACAPEDHDSKTIITREWKASDNHAANESSAVADDVDEREKESLESSDLGKITRQHVATAESISKDHLQVLSNRGMWSYVLGVSATVLVSVILVVNIWAYVRS 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01127 563 ProSiteProfiles NAC domain profile. 21 171 IPR003441 GO:0003677|GO:0006355
Phco3g01127 563 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 20 241 - -
Phco3g01127 563 MobiDBLite consensus disorder prediction 491 509 - -
Phco3g01127 563 Pfam No apical meristem (NAM) protein 22 147 IPR003441 GO:0003677|GO:0006355
Phco3g01127 563 SUPERFAMILY NAC domain 13 171 IPR036093 GO:0003677|GO:0006355
Phco3g01127 563 MobiDBLite consensus disorder prediction 177 228 - -
Phco3g01127 563 MobiDBLite consensus disorder prediction 418 434 - -
Phco3g01127 563 Gene3D NAC domain 30 175 IPR036093 GO:0003677|GO:0006355
Phco3g01127 563 MobiDBLite consensus disorder prediction 482 510 - -
Phco3g01127 563 MobiDBLite consensus disorder prediction 418 437 - -
Phco3g01127 563 MobiDBLite consensus disorder prediction 190 219 - -
Phco3g01127 563 FunFam Nac domain-containing protein 86 30 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01127 Phco-Chr3 9718003 9721280 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Phco3g01127 NAM 5.1e-36 No_clan