Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01113 ATGCATGGAAAGGCTTTAAAAGGAAGATTCAGGAACAAACAAAGAGACTGTTTAAAGATGGGTTATTTATGTGATTTTTGTGGAGACCAGAGGTCATTGGTGTACTGCCGCAGTGATGCTGCATGCTTATGTTTGTCGTGTGATCGAAATGTTCATTCTGCTAATGCCCTATCTAGGCGTCATTCGAGAAACCTTCTATGTGAGAGATGTAATTTACAACCTGCTTTTGTGAGGTGTGATGAAGAGAAAATTTCACTTTGTCAGAACTGTGATTGGTTGGCTCATGGTACCTCACCGACTTCTTCGACACACAAGAGGCAGACAATCAATTGCTACTCTGGCTGCCCTTCAGCTGCAGAATTTTCTTCAATATGGTCCTTTTTCTTAGATATCCCTTCTATGGGTGAAGCGTGTGAGCAGGAACTGGGTTTGATGAGCATTAATGAGAATGGCAACAATGGCAACAAGAGTGATTTGGTTCCTCCAGAAGGGCAGAATGTGTCTGGTTCAGCTCAAGTGACAGATCTACCCGCCAAGGTTAAATTTTGGGCCAGCACATCTTCACAACCGGTGTCAGGCTCAGAACCTCGTATTCTGGACCAGCCACCTGGGCCTGGCAATGAATGTATGCCCAAGTTGTACTGTCCTGGGAAAAAAATTTCTGGGATAAGTGAAGATGATAATCTATATGATGATTTTATCATGGATGAAGTGGATCTAGAACTTGAGAACTACGAGGAACTTTTTGGGATGGCTCTCAGTCATTCTGAAGAGCTTTTTGAAAATGGTGGAATTGAGAGCTTATTTGAGGCAAAAGACATGTCTGCTAGTGTTGGTGAATCCCACTGTCAGGGTGCTGTTGCTGCTGAGGGATCATCTGCTGGGTTGGTCAATGCTATCCAATCAGCATGCAGCAATGCAGCATCTGCAGATTCAATGTTGAGTACAAAAACGGAACCAATTGTTTGTTTTACGGGTAGGCAATCTCAATCAAACATTTCTTTTTCTGGTGTTACAAAAGAAAGTGCTGGTGACTATCAAGACTGTGATGCTTCTTCAATGCTTCTCATGGGAGAGCCTCCCTGGTGTCCTCCTTGCCCTGAGAGTTCTCTGCATTCTGCCAACCGTAGCAACGCTGTAATGCGCTACAAGGAAAAGAAGAAGACCCGGAAGTTCGAGAAGAAAGTAAGGTATGCCTCTCGCAAGGCTAGGGCTGATGTCAGAAGACGTGTGAAGGGCCGATTTGTTAAAGCCGGTGATGTCTATGACTATGACCCTTTGAGCCAAACCAGAAGCTTCTGA 1302 0.4439 MHGKALKGRFRNKQRDCLKMGYLCDFCGDQRSLVYCRSDAACLCLSCDRNVHSANALSRRHSRNLLCERCNLQPAFVRCDEEKISLCQNCDWLAHGTSPTSSTHKRQTINCYSGCPSAAEFSSIWSFFLDIPSMGEACEQELGLMSINENGNNGNKSDLVPPEGQNVSGSAQVTDLPAKVKFWASTSSQPVSGSEPRILDQPPGPGNECMPKLYCPGKKISGISEDDNLYDDFIMDEVDLELENYEELFGMALSHSEELFENGGIESLFEAKDMSASVGESHCQGAVAAEGSSAGLVNAIQSACSNAASADSMLSTKTEPIVCFTGRQSQSNISFSGVTKESAGDYQDCDASSMLLMGEPPWCPPCPESSLHSANRSNAVMRYKEKKKTRKFEKKVRYASRKARADVRRRVKGRFVKAGDVYDYDPLSQTRSF 433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01113 433 SMART bboxneu5 19 66 IPR000315 GO:0008270
Phco3g01113 433 SMART bboxneu5 67 109 IPR000315 GO:0008270
Phco3g01113 433 ProSiteProfiles Zinc finger B-box type profile. 62 109 IPR000315 GO:0008270
Phco3g01113 433 Pfam CCT motif 376 418 IPR010402 GO:0005515
Phco3g01113 433 ProSiteProfiles CCT domain profile. 376 418 IPR010402 GO:0005515
Phco3g01113 433 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 20 420 - -
Phco3g01113 433 CDD Bbox1_BBX-like 23 63 - -
Phco3g01113 433 CDD Bbox1_BBX-like 66 109 - -
Phco3g01113 433 ProSiteProfiles Zinc finger B-box type profile. 19 66 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01113 Phco-Chr3 9581049 9591277 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Phco3g01113 CCT 2.6e-16 CL0281