Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01109 ATGGAGTTTCCGAACGAAGCAATATCAGAAGGGTCTTCTCAGAAGAAAACTGGAAGAGGGAAAATAGAGATCAAGCGGATCGAGAACACCACCAATCGGCAAGTTACCTTCTGCAAACGTCGCAACGGGTTGCTCAAGAAGGCTTATGAATTGTCTGTTCTCTGTGATGCTGAAGTTGCTCTTGTTGTCTTCTCCAGCCGTGGACGCCTTTATGAGTATGCCAATAACAGTGTTAGAGGAACTATCGATAGGTACAAGAAAGCATGTGCTACTTCCTCAAATGCAGAATCTGTCTCTGAAGCTAATACACAGTTTTATCAGCAAGAATCATCCAAGTTAAAAAGACAAATCAGAGACATTCAAAATCTAAACAGGCACATCCTTGGTGAAGCTCTTAGTTCTCTAAGTCTAAAGGAATTAAAGAATCTTGAGAGTAGATTGGAGAAAGGTTTGAGCAGAGTTAGATCCAGAAAGCATGAGACATTGTTTGCGGATATCGAGTTCATGCAAAAGCGGGAAATGGAGCTGCAAAACCACAATAATTTTCTGCGAGCTAAGGTTTCTTCATTCTCCAAGACTCTCTCTATATATAGATATAGATATAATATAGCTGAACACGAGAGAGAACAACAACATATGACAGGAAGTGTGTGCGAGTCCTTACCACCTTCACAATCATATGACAGGAATTTCTTCCCTGTAAATCTCATAGATTCCAGTCATCAATACTCACGTCAAGATCAGACTGCTCTTCAACTTGTGTAA 765 0.4052 MEFPNEAISEGSSQKKTGRGKIEIKRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALVVFSSRGRLYEYANNSVRGTIDRYKKACATSSNAESVSEANTQFYQQESSKLKRQIRDIQNLNRHILGEALSSLSLKELKNLESRLEKGLSRVRSRKHETLFADIEFMQKREMELQNHNNFLRAKVSSFSKTLSIYRYRYNIAEHEREQQHMTGSVCESLPPSQSYDRNFFPVNLIDSSHQYSRQDQTALQLV 254
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01109 254 Coils Coil 137 157 - -
Phco3g01109 254 MobiDBLite consensus disorder prediction 1 20 - -
Phco3g01109 254 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 26 73 IPR002100 GO:0003677|GO:0046983
Phco3g01109 254 CDD MADS_MEF2_like 18 94 IPR033896 GO:0000977|GO:0045944
Phco3g01109 254 SMART madsneu2 17 76 IPR002100 GO:0003677|GO:0046983
Phco3g01109 254 Gene3D - 29 125 IPR036879 GO:0003677|GO:0046983
Phco3g01109 254 ProSiteProfiles K-box domain profile. 103 193 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco3g01109 254 ProSitePatterns MADS-box domain signature. 19 73 IPR002100 GO:0003677|GO:0046983
Phco3g01109 254 PANTHER SERUM RESPONSE FACTOR HOMOLOG 19 198 - -
Phco3g01109 254 Pfam K-box region 101 187 IPR002487 GO:0003700|GO:0005634|GO:0006355
Phco3g01109 254 Coils Coil 106 126 - -
Phco3g01109 254 PRINTS MADS domain signature 19 39 IPR002100 GO:0003677|GO:0046983
Phco3g01109 254 PRINTS MADS domain signature 54 75 IPR002100 GO:0003677|GO:0046983
Phco3g01109 254 PRINTS MADS domain signature 39 54 IPR002100 GO:0003677|GO:0046983
Phco3g01109 254 SUPERFAMILY SRF-like 18 93 IPR036879 GO:0003677|GO:0046983
Phco3g01109 254 ProSiteProfiles MADS-box domain profile. 17 77 IPR002100 GO:0003677|GO:0046983
Phco3g01109 254 FunFam agamous-like MADS-box protein AGL11 29 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01109 Phco-Chr3 9500328 9504280 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Phco3g01109 K-box 1.2e-25 No_clan