Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01100 ATGCAGCAAGATCACAGAAAAAAGGGTTCAATGGAGATGGAATTTTTCTCTGATTATGGCGATGCCAACAGGTACAAAATTCAAGAGGTCATTGGGAAAGGCAGTTATGGTGTTGTTTGTTCAGCTATTGACACTCATACTGGCCAGAAAGTAGCAATTAAAAAGATACATGATATCTTCGAGCATGTATCTGATACTGCACGTATTCTCCGTGAGATAAAGTTGCTTAGACTTCTTCGACATCCTGATATTGTTGAAATTAAGCATGTTATGTTGCCTCCTTCGAGGAGGGACTTCAAAGATATTTACGTTGTTTTTGAGCTAATGGAGTCTGATCTGCATCAAGTCATAAAGGCCAATGATGACTTAACAAAAGAGCACTATCAATTTTTTCTTTACCAGTTACTTCGAGCATTGAAGTATATTCACACTGCAAATGTTTATCATCGAGACTTGAAGCCAAAGAATATATTAGCCAATGCAAACTGTAAACTTAAAATATGTGATTTTGGGTTAGCTCGAGTTGCTTTTAGTGACACACCAACAACTGTATTTTGGACGGATTATGTTGCTACAAGGTGGTATAGAGCACCAGAGCTCTGTGGATCCTTTTACTCAAGGTATACTCCAGCAATTGATATTTGGAGTATAGGTTGCATCTTTGCTGAAGTATTGATAGGAAAGCCTCTTTTTCCTGGAAAAAATGTTGTCCATCAGTTGGATCTGATGACAGATCTGCTTGGTACTCCGTCACTGGATACTATATCCCGGGTACGCAATGATAAGGCACGGAGATACCTGACTAGTATGAGGAAAAAGCAGCCTATACCATTTGCACAAAAATTTCCTAACGCAGATCCTTTAGCGCTACAACTACTTGAAAAGTTGCTAGCCTTTGATCCAAAAGACCGGCCTACTGCTGAAGAGGCATTAGCTGATCCTTACTTCAAGGGACTTGCGAAAGTGGAGAGGGAACCATCATGCCAGCCTATTACAAAAATGGAGTTTGAATTTGAAAGGAGAAGAGTCACAAAGGAAGAAATTGGAGAGTTAATTTTTCGTGAGATTCTAGAGTACCATCCTCAACTATTGAAAGACTACATAAATGGAACAGAGAGAACTAATTTTCTTTACCCAAGTGCTGTTGATCAATTCAAAAAGCAGTTTGCTCATCTTGAGGAAACTGGTGGCAAAAGTAGTCCAGTTATGCCACCTGAAAGAAAGCATGTATCACTTCCCAGGTCAACAATTATACATTCAAACATAGTACCCACAAAAGAGCAATCAAATATTACTTCAAGCAAAATCAGGCAAACAACTGAGGAATACAACAATAATTCCCGGGATACAGAAAATCCTGCCCCAAGGTCCATTCAGGGTCTGCAAAAATTTTCACTTGCAAAACCTGGTAAAGTTGTTGGGCCGGTTATTCCATACGAGTATGCAAGTGTTGTCAAGGGTTCATATGAGCCTAGAACATTAATGAGAGGTTCTGTGCTTCCTTCTCAACTTACTCCCCCGACGAATCATTATCAAAGATTAACCCCTGGGAAACAAGAAAGGTCAGCAACAGAAGCTGACAAGTGTGTATCTTTGCAATCAAAACTTGCACAGCAATGTTGTGTGAATGGCCAAATAGCACCAGAAATAGCTATAAATATTGATTCCAACCCTTTTTTCATGACACGAGCAGGAGTGAACAAGATAGAGCAGGATGACCGAATAGGCATTGACACAAAGTTGCTGCAATCAAAGGCTCATCAATATGGTGGGATTAGTACAACTGCTCATAGAAAGGTTGGATCGGTTCAGTATGGTATATCAAGGTTGTTCTAG 1836 0.3976 MQQDHRKKGSMEMEFFSDYGDANRYKIQEVIGKGSYGVVCSAIDTHTGQKVAIKKIHDIFEHVSDTARILREIKLLRLLRHPDIVEIKHVMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTVFWTDYVATRWYRAPELCGSFYSRYTPAIDIWSIGCIFAEVLIGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNDKARRYLTSMRKKQPIPFAQKFPNADPLALQLLEKLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEEIGELIFREILEYHPQLLKDYINGTERTNFLYPSAVDQFKKQFAHLEETGGKSSPVMPPERKHVSLPRSTIIHSNIVPTKEQSNITSSKIRQTTEEYNNNSRDTENPAPRSIQGLQKFSLAKPGKVVGPVIPYEYASVVKGSYEPRTLMRGSVLPSQLTPPTNHYQRLTPGKQERSATEADKCVSLQSKLAQQCCVNGQIAPEIAINIDSNPFFMTRAGVNKIEQDDRIGIDTKLLQSKAHQYGGISTTAHRKVGSVQYGISRLF 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01100 611 SMART serkin_6 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01100 611 SUPERFAMILY Protein kinase-like (PK-like) 21 320 IPR011009 -
Phco3g01100 611 MobiDBLite consensus disorder prediction 499 519 - -
Phco3g01100 611 FunFam Mitogen-activated protein kinase 111 339 - -
Phco3g01100 611 Gene3D Phosphorylase Kinase; domain 1 40 362 - -
Phco3g01100 611 MobiDBLite consensus disorder prediction 499 520 - -
Phco3g01100 611 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 24 367 - -
Phco3g01100 611 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01100 611 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Phco3g01100 611 CDD STKc_TDY_MAPK 24 361 - -
Phco3g01100 611 MobiDBLite consensus disorder prediction 426 457 - -
Phco3g01100 611 FunFam Mitogen-activated protein kinase 15 118 - -
Phco3g01100 611 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g01100 611 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524
Phco3g01100 611 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01100 Phco-Chr3 9428440 9433949 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_MAPK Phco3g01100 Pkinase 2.5e-68 CL0016