Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01092 ATGGCGAATGAGAAGGATCGTTTTTATGACCCCTTTCATTACAATCACCATGAACATCAACTCTCTTCAAGCTTTCCATCCTTTAGGGACAACAACTCTGCACCAATTACCACACAAAACTTTCAAGGGTTTCATCATAGTCCTTCTCATCATCGCACCACTTTCACTGACTGCTTACATGGTTCCATGGATTACAACACCCTCTCTAGAGCCTTTGACATGTCTTGCTCGTCATCTGAAGTGATCTCCTCCATTGATGAAAACCCCAAGAAGCCTAGTGCAGGAGACTCAGCAGGGATCAGTGGGAACCAGTCAACACCCAATTCATCGGTCTCCTCGTCGTCCAATGAAGCTGAGGCACTCATAGAAGAAGACTCAACCAAAAGCCAGAAGAAAGATAAGCAACCAAAAGGGTGCGAAGATGGAGAAGAAAAGCCTAAGAAAGAGAACAAGCCTAAAAAGAAAGAGAAAAAGGCAAGAGAGCCTCGTTTTGCCTTCTTGACTAAAAGTGAGATCGATAACCTTGAAGATGGATACAGATGGAGAAAATATGGACAGAAAGCAGTCAAGAATAGTCCCTACCCAAGGAGCTACTATAGGTGCACCAGTCAGAAGTGCAGTGTAAAGAAAAGGGTGGAAAGATCATTCCAAGATCCATCAGTAGTGATCACAACATATGAAGGGCAACACAACCATCACTGTCCAGCAACACTAAGGGGCAGTGCCGCCAGCATGTTGTCAGCACCTCCCTTTTTTGGTTCCTCTTATATGGGGTCAAGCTTACCCCAAGATTTTCTTGCTCAGTTGCTTCCAAGTTATAGCCAAAATGATCACCCAAATCCAATGTTCCACCAAAACCTTTCCCATAATCTCCATCTCCACCCGCAACAACATCAGCACCAGTTCCAACTCCCTCGTGACTATGGTTTGTTGCAAGACCTACTGCCATCATCATTCCCAGCCAAACAAGAGCCATGA 978 0.4489 MANEKDRFYDPFHYNHHEHQLSSSFPSFRDNNSAPITTQNFQGFHHSPSHHRTTFTDCLHGSMDYNTLSRAFDMSCSSSEVISSIDENPKKPSAGDSAGISGNQSTPNSSVSSSSNEAEALIEEDSTKSQKKDKQPKGCEDGEEKPKKENKPKKKEKKAREPRFAFLTKSEIDNLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCSVKKRVERSFQDPSVVITTYEGQHNHHCPATLRGSAASMLSAPPFFGSSYMGSSLPQDFLAQLLPSYSQNDHPNPMFHQNLSHNLHLHPQQHQHQFQLPRDYGLLQDLLPSSFPAKQEP 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01092 325 FunFam WRKY transcription factor 57 161 235 - -
Phco3g01092 325 Gene3D WRKY domain 159 236 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g01092 325 ProSiteProfiles WRKY domain profile. 170 235 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g01092 325 MobiDBLite consensus disorder prediction 83 162 - -
Phco3g01092 325 SMART WRKY_cls 175 234 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g01092 325 Pfam WRKY DNA -binding domain 176 232 IPR003657 GO:0003700|GO:0006355|GO:0043565
Phco3g01092 325 MobiDBLite consensus disorder prediction 121 162 - -
Phco3g01092 325 MobiDBLite consensus disorder prediction 97 120 - -
Phco3g01092 325 SUPERFAMILY WRKY DNA-binding domain 168 235 IPR036576 GO:0003700|GO:0006355|GO:0043565
Phco3g01092 325 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 54 289 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01092 Phco-Chr3 9379178 9381035 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Phco3g01092 WRKY 1.2e-25 CL0274