Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01053 ATGCAGAAGGAAAATAATCATGAAGGAAAACAGGGATTCTCGGTTACCGAGCATCTATCTGTTGTTTTCCCTATCTTCTCTTTCCATTTCTTGGTCAACCTTTGGTTCATTGCTTCACTTTTTCTTTCCCTTCCAAGTCTCCCCTTCTTAGGTTCAAGGGACTTTGAGACCCTTCAGTATTCTTCATGTCAAACTAGGCATGTTCTTTACTTTTTGTTTCTTTGCAGCGTTTTGAATCCTCTTCCAAGAGTCTCTTGCTCAAGTGACTTTGGTGCTGTGGTTGGGGAAACAGTGCCTTTGTGGAATTTTGCTTATTTGGGATTGACTCAATTGGAACCTACGGTATTTGGGGTCATGGACAACTCAAATGATTCATCATCATCCTTGAGTTTTGTATCATCTCAACTTTCACATGGTTCTAGTAATCACTACGTGTCTTCCTCTACCAGCAGTGAGCATGGGGCAAATATTGAAATTTTGACTCTAAATAAGCTCAGTGGAAGCCTTGAGAAGTTACTGATTGATGCTGAGTATGACTATAGTGATGCTGAGATTGTCGTTGAAGACATATCTGTGGGTGTTCATCGCTGTATATTGGCCTCGCGTAGTCCTTTTTTTCATGAGCTTTTTAAGAAAGGAACGGATGGATCAGGGAAGGAAGGAAAACCAAGGTATCTCATGTCAGAATTGGTGCCTTATGGCGCAGTTGGATATGATGCTTTCCAAGTTTTCTTGTATTATTTGTACACTGGAAGGCTAAAAGATTCACCAACAGAAGTGACAACATGTGTTGGTGAAACATGTATCCATGATGCATGTCGCCCTGCTATCAATTATGCGTTGGAGCTGATGTATGCTTCTGCCGCTTTTCAGATGAAAGAGCTGGTTTTACTTTTTCAGCGGCATCTCCTAAACTTTGTTGAGAAGGCTCTTGTGGAAGATGTGATTCCTATTCTTATGGCTGCTTTCAACTGCCAACTAGAGCAGCTTCTCTCTCGGTGCATTCACAGAGTAGCAAAGTCTGACTTTGACAACATATCTTTGGAAAAAGAGCTCCCTCATGAAGTTGTGACTGAAATCAAATCGTGCCGTCTCTCATCTCAGCCAGAATCGGCAGCTGATGCAATGGAAGTGGAGCCTTTGAGTGAAAAGAGTATCATGAGAATCCGTAAAGCATTGGACTCTGATGATGTTGAGCTACTGAAGCTTCTTCTAAATGAGTCTAGGGTCACCCTAGATGATGCATATGCCCTGCACTATGCCTGTGCCTATAGTGATTCTAAGGTTATTCAAGAACTTCTTGGTCTAGGTATGGCTGATATTCTTCGTAGAAATTCTCGAGGATACACTGTTCTTCATGTGGCTGCAAGGCGAAAGGATCCATCCATTTTGGTAGCACTGCTGAATAAAGGGGCATGTGCAACAGATACCACTCCAGATGGTCAAACGGCTCTTTCAATTTGTCAGAGGTTGACAAGACGCAAGGATTATCATGAGAAAACAGTGCAGTGTAAGGAATCTAACAAGGACAGGCTCTGTGTTGATGTCCTGGAGAGAGAGATGAGAAGAAGTTCTATGACTGTGAGTATGTCTGTTTCATCCCAGTTAACAGCTGATGATTTGCACATGAGACTGGATTACCTTGAAGATAGAGTTACATTTGCTCGGTTGTTGTATCCTGCTGAGGCTAGAGTAGCCATTGAGAATGCTGAGGCAGATTCGTCATCACTGTATGCAAACGCATCAGCTTTGGAGGGCGCAAATGGAAATGTAAAAGTAGATCTAAATGAATCTCCCTCTGCTCGAACCAGAAAACTTCAGTTAAGATTGCATGCCCTTATGAAAACAGTTGAGAATGGTAGGCGCTTCTTTCCCCATTGTTCTGAAGTGCTTGACAAGTTTCTGGAAGATGATATGCCAGATGTGTTCTTCCTAGAAAAGGGCAGTGAAGAAGAGCAGAGAATGAAGAAAGCACGGTTCATGGAACTTAAAGATGATGTGCAGAAAGCATTTCACAAAGATATGGCTGAAAATAACCATACAGCTTTTTCATCTTCAGTGTCCTCCTCATCATCTTCTACTCGGAGGGAAAGTCTTAACCACAGAGTGAGGAAAAAATGA 2121 0.422 MQKENNHEGKQGFSVTEHLSVVFPIFSFHFLVNLWFIASLFLSLPSLPFLGSRDFETLQYSSCQTRHVLYFLFLCSVLNPLPRVSCSSDFGAVVGETVPLWNFAYLGLTQLEPTVFGVMDNSNDSSSSLSFVSSQLSHGSSNHYVSSSTSSEHGANIEILTLNKLSGSLEKLLIDAEYDYSDAEIVVEDISVGVHRCILASRSPFFHELFKKGTDGSGKEGKPRYLMSELVPYGAVGYDAFQVFLYYLYTGRLKDSPTEVTTCVGETCIHDACRPAINYALELMYASAAFQMKELVLLFQRHLLNFVEKALVEDVIPILMAAFNCQLEQLLSRCIHRVAKSDFDNISLEKELPHEVVTEIKSCRLSSQPESAADAMEVEPLSEKSIMRIRKALDSDDVELLKLLLNESRVTLDDAYALHYACAYSDSKVIQELLGLGMADILRRNSRGYTVLHVAARRKDPSILVALLNKGACATDTTPDGQTALSICQRLTRRKDYHEKTVQCKESNKDRLCVDVLEREMRRSSMTVSMSVSSQLTADDLHMRLDYLEDRVTFARLLYPAEARVAIENAEADSSSLYANASALEGANGNVKVDLNESPSARTRKLQLRLHALMKTVENGRRFFPHCSEVLDKFLEDDMPDVFFLEKGSEEEQRMKKARFMELKDDVQKAFHKDMAENNHTAFSSSVSSSSSSTRRESLNHRVRKK 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01053 706 FunFam BTB/POZ domain and ankyrin repeat-containing protein NPR1 354 511 - -
Phco3g01053 706 Pfam NPR1/NIM1 like defence protein C terminal 489 690 IPR021094 -
Phco3g01053 706 Gene3D Potassium Channel Kv1.1; Chain A 151 340 IPR011333 -
Phco3g01053 706 ProSiteProfiles Ankyrin repeat region circular profile. 447 472 - -
Phco3g01053 706 SUPERFAMILY POZ domain 178 305 IPR011333 -
Phco3g01053 706 Pfam Ankyrin repeats (3 copies) 396 475 IPR002110 GO:0005515
Phco3g01053 706 ProSiteProfiles Ankyrin repeat profile. 447 472 IPR002110 GO:0005515
Phco3g01053 706 SMART BTB_4 181 307 IPR000210 GO:0005515
Phco3g01053 706 SMART ANK_2a 413 443 IPR002110 GO:0005515
Phco3g01053 706 SMART ANK_2a 447 476 IPR002110 GO:0005515
Phco3g01053 706 Gene3D - 383 522 IPR036770 -
Phco3g01053 706 ProSiteProfiles BTB domain profile. 181 257 IPR000210 GO:0005515
Phco3g01053 706 MobiDBLite consensus disorder prediction 675 706 - -
Phco3g01053 706 Pfam Domain of unknown function (DUF3420) 342 390 IPR024228 -
Phco3g01053 706 MobiDBLite consensus disorder prediction 678 696 - -
Phco3g01053 706 SUPERFAMILY Ankyrin repeat 390 490 IPR036770 -
Phco3g01053 706 PANTHER REGULATORY PROTEIN NPR3 140 700 IPR044292 GO:0009862|GO:2000022|GO:2000031
Phco3g01053 706 FunFam Regulatory protein NPR3 155 339 - -
Phco3g01053 706 CDD BTB_POZ_NPR_plant 163 307 - -
Phco3g01053 706 Pfam BTB/POZ domain 178 261 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01053 Phco-Chr3 8989742 8995827 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Phco3g01053 NPR1_like_C 2.4e-81 No_clan