Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01041 ATGAACAGCACTATTCCAGGTTGGGATTTTGAGAGTGATACATGTCTCACCAACCAGAGAAAGCCCACAGGGCTGGACCGAGAACACGTAGAACTCCTATGGCAAAATGGGCAAGTAGTTATGCACAGCCAAGCAAATAAGAGGCTACTTGAGAATTCATCTAACATGAGACTGGTGCAGAAAACTGCTCAATCGACATTAAAGGCCAGTGGGCCGTATGGGAACTCAAACAACTTGGATCAAGAAGAGGCAGCCCCATGGATCCAATACCCTCTTGATGACCCTTTAGAACAAGAATTTTGTTCAAACCTTTTATCTGAGCTACCACCACCCTGTGAAGTTGAATCTTATTACATGCCAATCAGGCAATTGGAAGAGGAAAAGTTTGCCAATATTTTCTCCCCTAGTGCCCCCCATCACCCTCCTTCACCTTCACAACCACTACCTTCTAAAATGAAATCCTGTGTTCATGGACTCCAAGAGAATCCTATGCCTGCTTCAGGATTTCATGTTGCTGATTCATCTCAGAAAATCAATGACTTTGGTGCATCACGGAAGGTGCTAAATTTTCCTCACTTTTCAGCACATGTTTCTTCAACATCTCAAAAAACTACAGCTAAGCTCTCACAAAGTGAGGCTAGAGAGCACTCAGTGATCACGGTTGGTTCAAGTCACTGTGACAGCAATCACATCCCTCAGGACCAAGATGTAAACAGGGTTTCAAGCAGCGGCGTTTGGACCACCACTAAAAATATCACTTTATCTTCTGAGCCTGAAGCTGTAGATTGTATCCAGAGACCAATTCCTAGGAGTGAGAGAGGAAAATCTGAGATGATTGAACCAACTGTGACTTCATCTTCCGGTGGCTCAGGCAGTACTGGTATTGGAAGAACTTGTTCCCTGTCAACAAGAGACCATGGCCAAAAGAGAAAAGGGACAGAAGAAGACGAATTAGAGGAGCAAAGTGAGGCCACAGAACTTAAATCAGCAGACGGAAACAAGTTATCTCAGCGGACAGGGCCTTCCAGAAAGAACCGCGCAGCTGAAGTGCATAATCTATCCGAAAGGAGAAGAAGAGATAGGATCAACGAGAAGATGAGAGCATTGCAGCAACTAATACCTAACAGTAACAAGACAGACAAAGCATCAATGTTAGAAGAGGCGATCGAATACTTGAAATCACTTCAGTTTCAGCTTCAGGTAATGTGCATGGGTGCTGGCATGACACCAGTTATGTTTCCAGGAATTCAGCACTATATGCCACAGATGGGAATGGGAATAGGTGGACCTTCTTTGCCTTCCATTCACAACCCAATGCAATTACCTAAACTACCACATGGTCAACCCATGTCTGTCACTCACCCTCAGACGCCAAACCAGAATCTAATGTGCCAAAATCCAGTTTTGGGTGCCTTCAATTACCAAAATCAGATGCAAAACCCATGCCTTTCAGAACAATATGCACGTTACATGGGCTACCATCTCCTGCATAGTGCCTCCCAGGTTCTTCCACCTTTTACTGAATAG 1527 0.4453 MNSTIPGWDFESDTCLTNQRKPTGLDREHVELLWQNGQVVMHSQANKRLLENSSNMRLVQKTAQSTLKASGPYGNSNNLDQEEAAPWIQYPLDDPLEQEFCSNLLSELPPPCEVESYYMPIRQLEEEKFANIFSPSAPHHPPSPSQPLPSKMKSCVHGLQENPMPASGFHVADSSQKINDFGASRKVLNFPHFSAHVSSTSQKTTAKLSQSEAREHSVITVGSSHCDSNHIPQDQDVNRVSSSGVWTTTKNITLSSEPEAVDCIQRPIPRSERGKSEMIEPTVTSSSGGSGSTGIGRTCSLSTRDHGQKRKGTEEDELEEQSEATELKSADGNKLSQRTGPSRKNRAAEVHNLSERRRRDRINEKMRALQQLIPNSNKTDKASMLEEAIEYLKSLQFQLQVMCMGAGMTPVMFPGIQHYMPQMGMGIGGPSLPSIHNPMQLPKLPHGQPMSVTHPQTPNQNLMCQNPVLGAFNYQNQMQNPCLSEQYARYMGYHLLHSASQVLPPFTE 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01041 508 PANTHER TRANSCRIPTION FACTOR PIF3 21 479 IPR044273 GO:0003700|GO:0006355
Phco3g01041 508 MobiDBLite consensus disorder prediction 257 359 - -
Phco3g01041 508 MobiDBLite consensus disorder prediction 278 302 - -
Phco3g01041 508 MobiDBLite consensus disorder prediction 133 152 - -
Phco3g01041 508 Gene3D - 342 402 IPR036638 GO:0046983
Phco3g01041 508 CDD bHLH_AtPIF_like 346 409 IPR047265 -
Phco3g01041 508 SMART finulus 352 401 IPR011598 GO:0046983
Phco3g01041 508 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 346 395 IPR011598 GO:0046983
Phco3g01041 508 Pfam Helix-loop-helix DNA-binding domain 350 396 IPR011598 GO:0046983
Phco3g01041 508 FunFam Basic helix-loop-helix transcription factor 341 404 - -
Phco3g01041 508 MobiDBLite consensus disorder prediction 328 343 - -
Phco3g01041 508 MobiDBLite consensus disorder prediction 344 359 - -
Phco3g01041 508 MobiDBLite consensus disorder prediction 303 327 - -
Phco3g01041 508 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 343 408 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01041 Phco-Chr3 8913297 8917246 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Phco3g01041 HLH 6.4e-15 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco11g02231 11 20392688 20396320 Phco3g01041 3 8913297 8917246 PCT
Phco11g02202 11 19664055 19668267 Phco3g01041 3 8913297 8917246 PCT