Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01031 ATGAAGCTTTCTTCATCTGGATTTAATCAACCGGGGGAGGAAGAAGGGGAGAAAAAATGTTTGAATTCTGAGCTTTGGCATGCATGTGCTGGTCCTCTAGTTTCTCTGCCTCCTGTTGGAAGTCGTGTAGTCTACTTTCCCCAAGGTCACAGTGAGCAGGTTGCTGCTTCAACCAACAGGGAAGTAGATGCACATATTCCTAATTACCCTAACTTGCCACCGCAACTTATCTGTCAGCTTCACAATGTAACAATGCATGCAGATGCTGAAACAGATGAAGTATATGCACAAATCACTCTGCAACCTCTAAGTCCACAAGAGCAAAAGGAGGTGTATCTTATGCCTGCTGAATTGGGCTCTCCCAACAAGCAACCAACCAACTACTTCTGCAAAACACTAACAGCAAGTGATACCAGCACTCATGGAGGGTTTTCTGTTCCTCGAAGAGCAGCTGAAAAAGTGTTCCCTCCTCTTGATTACTCACAGCAGCCTCCTGCTCAAGAACTAATTGCCAGAGATCTTCATGATAATGAATGGAAGTTTAGACACATATTTCGAGGTCAGCCCAAAAGGCATCTTCTCACTACTGGTTGGAGTGTCTTTGTCAGTGCCAAGAGGCTTGTTGCCGGTGATTCAGTCCTTTTCATCTGGAATGAAAAAAACCAATTACTTTTGGGCATAAGGCGGGCAAATCGTCCACAGACTATCATGCCATCATCAGTTCTGTCAAGTGATAGCATGCACATTGGTCTTCTTGCTGCTGCAGCTCATGCAGCTGCTACAAACAGTCGCTTTACTATATTCTATAATCCTAGGGCAAGCCCATCTGAGTTTGTCATTCCTTTGGCCAAGTATGTTAAAGCAGTGTATCATACACGAGTTTCTGTTGGCATGCGATTTAGGATGCTGTTTGAGACAGAAGAATCAAGTGTTCGTCGATACATGGGTACGATAACTGGTATTAGTGATTTAGATCCGGTCCGCTGGCCAAATTCACACTGGCGTTCTGTGAAGGTTGGCTGGGATGAGTCCACTGCAGGGGAGAGGCAGCCAAGAGTTTCCTTGTGGGAGATTGAACCTCTGACAACATTCCCAATGTATCCATCTCCATTCCCCTTAAGGTTGAGGCGTCCTTGGCCAACGGGCCTACCTTCTTTGTATGGTCTTAAGGATGGAGACATGGGAATTGGTTCTCCATTCATGTGGCTCCAAGGTGGACTTGGGGATCAAGGAATGCAATCTTTAAACTTCCAGGGACTTGGTGTTACACCATGGATGCAACCTAAACTTGACTCTTCTATACCAGGTCTCCAACCTGAGTTATACCAAGCAATGACTTCTGCTGCATTCCAGGAAATGAGGACAATGGATCCTTCAAAATCTTCCCAATCTCTGTTGCAGTTTCAGCAGACTTCAAATGTTCCCAGTGCTCATACCTCTGAGGTACATAGGCAAGTATTACCACAGTCTCAGTCTCAAAGCACCCTTCTACAAAATTTTCAAGAAAACCAAGTGCCTCCTCAGTCACAACTTCTGCAACAGCAGCAGTTGCATCGTTACCACCCATATAGTGATCAGCGGCAACAACAGCAGCAACTTAAAAATTTGCCTGTTCAGCAGCAGTTACCAAACGTCATCTCTCCTTTGTCTAATTTTGCATCAGGTACCCAGTCTCAATCTCCTCCCATGCAAGCTCTTGCTATGCATTGCCAGCAGCAGAGTTTTCCTGAACCTATCAGGAATCATATTTCTGGTTCTGATGTTTCCCCTATCCAGAGTCTACTAGGTTCGTTCTCCCAGGATGGAACATCCCAGTTACTTAACTTGAATGGATCCAATTCCATTATATCTTCTGCATCCATCCTACCCAAGCAAATGACAGTTGAATCTCAGCTTCCCTCTGCTGCTCCTCAGTGCGTGTTGCCTCAGGTGGAGAACTTGGGAACATCACAATCAAATGTGTCTGAACTTGCTGCTTTGCCTCCATTTCCTGGAAGAGAACATTCTGCATATCATGGTGCTGCTGATCCTCAGAGCAATCTTTTATTTGGGATTAACATTGATCCCTCTTCTCTTATGCTGCAAAATGGCATGTCAAACCTGAGAAATATGGGCAATGTGAATGATTCATTATCATTGCCATTTTCTGCTTCAAATTGTGGTGGTGCTACAGGCACTGATTTCCCCTTAAGTTCAAACATGACAACTTCGAGTTGTGTGGATGAATCAGGCTTCTTGCAGTCTTCTGAAAATGTAGACCAAGCAAACACACCAACTGGAACCTTTGTTAAGGTTCACAAGTCAGGGTCCTTTGGCAGGTCACTGGACATTTCTAAGTTCAGCAGCTATGATGAGCTGCGTAGTGAGCTTGCTCGCATGTTTGGCCTTGAAGGCCAACTAGAGGACCCTAAGACTCAGAGATCAGGCTGGCAGCTTGTATTTGTTGACCGGGAGAATGATGTTCTTCTTCTTGGTGATGATCCTTGGCAGGAGTTTGTGAACAATGTGTGGTACATAAAAATACTATCTCCACTGGAAGTGCAGCAAATGGGCAAAGGTGTTAGTCCTTCTACTTCTGCCCCAGGTCACAAACTTTCTACCTCTGGCAACTCTTGTGATAATTATGTGAATCAACAAGAGTTGAGAAGTTCCAGAAATGGCATGGCATCAATGGGGTCTTTTCACTACTAG 2691 0.4485 MKLSSSGFNQPGEEEGEKKCLNSELWHACAGPLVSLPPVGSRVVYFPQGHSEQVAASTNREVDAHIPNYPNLPPQLICQLHNVTMHADAETDEVYAQITLQPLSPQEQKEVYLMPAELGSPNKQPTNYFCKTLTASDTSTHGGFSVPRRAAEKVFPPLDYSQQPPAQELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFIWNEKNQLLLGIRRANRPQTIMPSSVLSSDSMHIGLLAAAAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYHTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWPNSHWRSVKVGWDESTAGERQPRVSLWEIEPLTTFPMYPSPFPLRLRRPWPTGLPSLYGLKDGDMGIGSPFMWLQGGLGDQGMQSLNFQGLGVTPWMQPKLDSSIPGLQPELYQAMTSAAFQEMRTMDPSKSSQSLLQFQQTSNVPSAHTSEVHRQVLPQSQSQSTLLQNFQENQVPPQSQLLQQQQLHRYHPYSDQRQQQQQLKNLPVQQQLPNVISPLSNFASGTQSQSPPMQALAMHCQQQSFPEPIRNHISGSDVSPIQSLLGSFSQDGTSQLLNLNGSNSIISSASILPKQMTVESQLPSAAPQCVLPQVENLGTSQSNVSELAALPPFPGREHSAYHGAADPQSNLLFGINIDPSSLMLQNGMSNLRNMGNVNDSLSLPFSASNCGGATGTDFPLSSNMTTSSCVDESGFLQSSENVDQANTPTGTFVKVHKSGSFGRSLDISKFSSYDELRSELARMFGLEGQLEDPKTQRSGWQLVFVDRENDVLLLGDDPWQEFVNNVWYIKILSPLEVQQMGKGVSPSTSAPGHKLSTSGNSCDNYVNQQELRSSRNGMASMGSFHY 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01031 896 SUPERFAMILY DNA-binding pseudobarrel domain 115 258 IPR015300 -
Phco3g01031 896 ProSiteProfiles PB1 domain profile. 760 846 IPR000270 GO:0005515
Phco3g01031 896 ProSiteProfiles B3 DNA-binding domain profile. 129 231 IPR003340 GO:0003677
Phco3g01031 896 Gene3D - 756 851 - -
Phco3g01031 896 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 17 852 IPR044835 GO:0003677|GO:0006355|GO:0009725
Phco3g01031 896 MobiDBLite consensus disorder prediction 851 875 - -
Phco3g01031 896 FunFam Auxin response factor 127 231 - -
Phco3g01031 896 Pfam AUX/IAA family 749 844 IPR033389 -
Phco3g01031 896 SUPERFAMILY CAD & PB1 domains 753 836 - -
Phco3g01031 896 SMART B3_2 129 231 IPR003340 GO:0003677
Phco3g01031 896 Pfam Auxin response factor 255 338 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Phco3g01031 896 CDD B3_DNA 128 229 IPR003340 GO:0003677
Phco3g01031 896 Gene3D - 293 365 - -
Phco3g01031 896 Pfam B3 DNA binding domain 129 230 IPR003340 GO:0003677
Phco3g01031 896 Gene3D - 127 230 IPR015300 -
Phco3g01031 896 FunFam Auxin response factor 293 365 - -
Phco3g01031 896 MobiDBLite consensus disorder prediction 454 490 - -
Phco3g01031 896 FunFam Auxin response factor 755 851 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01031 Phco-Chr3 8836314 8843674 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Phco3g01031 AUX_IAA 1e-08 CL0072