Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01020 ATGGCTTTCTTCAGGAACTTTTCTAATGATACAGTATCACATGGTGTCATGGAAGATAAAAGCCAAGGACAGAATGCAAATAGAACTCATAGATCAGTAGGTAATGAATGTACTGATGCAACTTCTAGCGAGAAAGAATTTGATATGAACATGGAGGCACAGTATGAGAGTGATGGCGAACCAGTTGGTTCCGGTAGACTGCAAACTGAGGCAACAGCCGATGATGGAGATGCTGTGAAAGAATCAACCTTGCAGACTGCTGGTAGTAAAACAGCTATGATGGGAAGGTGGGGTTCAACTTTTTGGAAGGACTGCGGGCAAATGGGCCCTCAAAATGGTTCTGAATCTGGGCAGGAATCAAAAAGTGGATCAGATTATAGAAATGCAGATGGATCTGAAGATAATTCATTGGATGGAAGAGCAGGAAGATTAGACTCAGATGATGATGATGGGCAAAAGGAGGAAGGAAAATGTCCAAGAGGTCTCTCTGATGTTCCCGCTGAAGAAATGTTGTCAGATGAGTATTATGAGCAGGATGGGGAAGAGCAAAGTGATTCACTGCATTACGGTGGTATAAAAAAGCCTTCTGAATCGAATTCATGGCCACAACGGATGTCAACCACTGCAAATAGAACTTTGCATAGGAATTCGAGGTTTTCAGATGATGCTGAAGAAGATGATGACGACGACGGAGATAATGATAACGATGGTGATGATGCTGATTATGAAGAAGAGGATGAAGCAGATGAAGATGATCCTGATGATGCAGACTTTGAGCCTGCCGCAACTGGTCATGCTGGAAATAAGGATAAAGATTGGGAAGGTGAAGGCTCTGACGAAGATGATGACAGTGATGAAAATATAGTTGTCTCAGATGATGATGAATCTTTCTATGCTAAACGGCCTAAAGGAAGGCAACGAGGTAAGATTGGACAAAACATAAAATCTACCAGAGATCGCAAAGTGTATGCTGCATCTGGTCGGCAAAGAAGAGTTAAATCATCTTTTGAGGACAATGAGTCAACAACGGAGGATTCTGACAATGACAGTGATGAGGATTTCAAAAGCTCAAAAAAGCGGAGTGTTCATGTTCGCAAAAATAATGGTCGTTCTTCTTCGGCTATAGGTTTTTCTATGCGCAGCAGTGAAGTTCGCACTTCTAGTAGGACTGTTAGGAAGGTATCATATGTGGAAAGTGAAGAAAGTGAAGAAGTTGACGAAGGGAAAAAGAAAAAGTCCCAAAAGGAAGAAATTGACGAGGATGATAGTGACTCCATTGAAAAGGTGCTTTGGCATCAACCAAAGGGTACAGCTGAAGATGCTGAAAGGAATAATCGGTCAACAGAGCCTGTTTTAATGAGTCACTTGTTTGATTCAGAAATTGATTGGAATGAGATGGAATTTTTGATAAAATGGAAAGGGCAATCACATTTGCACTGTCAGTGGAAGTCTTTTGCTGAGCTTCAAAACCTCAGTGGTTTTAAGAAGGTTTTGAATTATACAAAGAAAATAATGGAAGACATGAGGTACAGGAGGACAATTTCAAGAGAGGAGATTGAGGTCAATGATGTTAGTAAGGAGATGGATTTAGATATTATCAAACAGAACAGTCAGGTGGAAAGGATAATTGCAGATAGAATCAGCAAAGATAATTCTGGCAATGTTATTCCAGAATACTTGGTCAAGTGGCAAGGACTATCTTATGCTGAAGCGACTTGGGAGAAGGACATTGATATTGCTTTTGCCCAACATGCTATTGACGAGTATAAGGATCGTGAGGCTGCTATGGCAGCAGTTCAAGGAAAGATGGTAGATTCTCAGCGTAAGAAAAGTAAAGCAAGTTTGCGCAAGCTTGAGGAACAACCTGAGTGGTTGAAGGGTGGAAAGCTCCGTGATTATCAACTTGAGGGTCTGAATTTTCTTGTTAACAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGCCTCGGAAAAACTGTTCAGTCAGTATCAATGCTTGGTTTTCTACAGAATGCCCAGCAAATCCATGGTCCTTTTCTTGTAGTTGTTCCACTCTCCACTTTATCGAATTGGGCCAAAGAATTCAGGAAGTGGCTTCCTGATATGAATATTATCATATATGTTGGTACTCGTGCTAGTCGAGAGGTTTGTCAACAGTATGAATTTTATAATGAAAAAAGACCAGGGAAGCCAATAAAATTCAATGCACTTTTGACGACATATGAAGTAGTTTTGAAGGATAAGGCTTTTCTGTCCAAGATCAAATGGAGTTACCTGATGGTGGATGAGGCTCATAGGCTAAAAAATAGTGAGGCACAGTTGTATACGACACTTTCAGAATTTAGCACCAAGAACAAGTTGCTTATCACTGGTACTCCTCTACAGAACAGTGTGGAAGAACTATGGGCCTTGCTTCATTTCCTTGACCCTGACAAGTTCAGGAGCAAGGATGAATTTGTTCAAAATTATAAGAATCTGAGTTCTTTTAATGAAAATGAGCTTGCAAATCTTCATACAGAATTGAGACCTCACATACTTCGAAGAGTTATCAAAGATGTGGAGAAATCATTACCCCCTAAAATTGAGCGTATCCTTCGGGTTGAAATGTCTCCTCTTCAGAAACAGTATTATAAGTGGATTTTGGAACGTAATTTTCACAATTTGAACAAAGGAGTTCGTGGGAATCAGGTTTCTCTTCTAAATATTGTGGTGGAATTAAAGAAGTGCTGCAACCATCCATTCTTGTTTGAAAGTGCTGATCATGGCTATGGTGGGGACTCAGGGAGTAGTGATAACAGTAAACTAGAGAGAATTGTTTTTAGCAGCGGCAAGCTTGTCATACTTGATAAGCTTCTTGTTCGATTGCATGAAACCAAACATCGTGTTTTGATTTTCTCTCAGATGGTTAGGATGTTGGATATACTGGGAGAATATATGTCACTTCGAGGATTTCAATTTCAGAGGCTTGATGGCAGTACAAAAGCTGAGCTACGACAGCAGGCAATGGATCATTTCAATGCACCTGGTAGTGATGATTTTTGCTTCCTTCTTTCAACACGGGCAGGAGGTTTGGGTATCAACCTAGCCACAGCAGACACTGTTATAATATTTGATTCTGATTGGAATCCTCAAAATGACCTGCAGGCAATGAGTAGAGCTCATAGAATTGGGCAACAAGAAGTTGTTAACATATATAGATTTGTGACAAGTAAAAGTGTTGAGGAAGATATTCTGGAACGTGCTAAGAAGAAAATGGTTCTGGATCACTTGGTGATTCAAAAATTAAATGCAGAGGGTAGACTGGAGAAGAAAGAAGCCAAAAAAGGAGGAAGTTATTTTGACAAAAATGAGCTGTCTGCAATCTTACGATTTGGAGCTGAGGAGCTTTTTAAGGAGGAAAGAAATGATGAAGAGAGCAAAAAACGACTCTTAAGTATGGATATAGATGAAATTCTTGAAAGAGCAGAGAAGGTTGAAGAGAAAGAACCTGATGGGGAACAGGGAAATGAGTTATTAAGTGCCTTTAAGGTTGCCAATTTTTGCAATGATGAAGATGATGGGAGTTTCTGGAGCCGATGGATAAAGCCGGATTCTGTGTTCCAAGCAGAGGAAGCTCTTGCTCCTCGTTCTGCTAGAAATATTAAAAGCTATGCAGAAGTTGATCCATCCGAAAGAACTAATAAAAGAAAAAAGAAGGAACCTGAACCACCTGAACGAGTTCAGAAACGGCGGAAAGCAGAGTATTCTGTTCCTGCAGTACCAATGATTGAAGGAGCATGTGTTCAAGTGAGAAATTGGTCATATGGGAATTTATCTAAAAGAGACGCACTTCGTTTTTCACGTTCACTTATGAAATATGGCAATGAGAGCCAAATTGACTTAATTGCTGCCGAGGTGGGTGGTGCTGTTGGTGCAGCACCAACTGGAGCACAGATTGAACTTTTCAATGCTCTTATTGATGGCTGTACAGAGGCAGTGGAACTTGGAAATTTAGATGTGAAGGGGCCTCTGCTGGATTTTTTTGGTGTCCCTGTGAAGGCAAGTGATCTACTTACCCGTGTCCAACAACTTCAACTTCTGGCAAAGCGCATTGATCGATATGAAGATCCTATTGCACAATTTCGTGTTCTGTCATATCTCAAACCATCAAACTGGTCCAAAGGTTGTGGATGGAATCAAATTGATGACGCTAGATTGCTTCTTGGAATATATTTCCATGGGTTTGGTAATTGGGAAAAGATAAGATTAGATGAAAGACTTGGCCTCACGAAAAAAATTGCTCCTGTAGAACTTCAACACCATGAAACTTTCTTACCACGAGCTCCAAATTTAAAAGATCGTGCTAATGCCCTTTTGGAGCAAGAACTAGCGGTTCTCGGTGTGAAAAATGCCAATAGCAAAGTTGGACGGAAGCCTTCAAAGAAAGAGAGAGATAATATCATCTCATTGGTACGTGGGCAGGAGAAAAAGAAAAAATCAGGTTCCGTTAATGTCCAAGTAAGAAAGGATAGATTTCAAAAACCCCAGAAGGTTGAATCTATAGTAAAGGAAGAGGGTGAAATGTCTGACAACGAGGAAGTATATGAGCAGTTCAAGGAGGTGAAATGGATGGAATGGTGTCAAGATGTAATGGTTGAAGAAATGAAAACTTTGAAACGTCTTCACAGGTTGCAGCAAACTAGTGCCAATCTTCCCAAGGAAAAGGTGCTTTCAAAAATACGCAACTATTTGCAACTTCTTGGGCGAAGGATAGATCAAATTGTGTTGGAACATGAAGAGGAACCCTATAAGCAAGATAGAATGACTGTGCGACTGTGGAAATATGTCTCCACTTTTTCCCATCTTTCAGGGGAAAGACTTCATCAAATATATTCCAAACTTAGACAGGAGCAAGATGAGGCAGGGGTTGGCCCCTCTCACGGCAATGGGTCGGTATCTGTTTCATTTACCAGAAATGGAAATCCATTCCGTGTCCATATGGAGAGGCAAAGAGGATTAAAAAATATGAGTACCTATCAAATGCCAGAAGCAGTTGATAATAGTGGGAAATCTGAGGCATGGAAACGAAGAAGAAGAGCTGAAAGTGATAATCAATTCCAGGGTCAGCCGCCACCTCAGAGGAATGCAAGTAATGGACTCCGGATTACTGATCCTAACTCACTCGGGATCCTAGGTGCTGGGCCATCGGATAAACGCTTTGCTAATGAGAAACCTTATAGGACACAACCTGGCGGGTTTCCTTCAAGACAGGGCTTCTCCTCAGCTATTGTACATTCTGTGGAATTTTTTTCTTCCACCCATGGGAATAAGATCTTGCGGATCCCTTTTTGGTGTCTTTTGGCGGATATGAGAAATATCCCTGCTCTGGGATTCTCATCCTTGAACAAAATGGCTGAAGCCGAAAAGATCTATAATGCAAGATGA 5433 0.4077 MAFFRNFSNDTVSHGVMEDKSQGQNANRTHRSVGNECTDATSSEKEFDMNMEAQYESDGEPVGSGRLQTEATADDGDAVKESTLQTAGSKTAMMGRWGSTFWKDCGQMGPQNGSESGQESKSGSDYRNADGSEDNSLDGRAGRLDSDDDDGQKEEGKCPRGLSDVPAEEMLSDEYYEQDGEEQSDSLHYGGIKKPSESNSWPQRMSTTANRTLHRNSRFSDDAEEDDDDDGDNDNDGDDADYEEEDEADEDDPDDADFEPAATGHAGNKDKDWEGEGSDEDDDSDENIVVSDDDESFYAKRPKGRQRGKIGQNIKSTRDRKVYAASGRQRRVKSSFEDNESTTEDSDNDSDEDFKSSKKRSVHVRKNNGRSSSAIGFSMRSSEVRTSSRTVRKVSYVESEESEEVDEGKKKKSQKEEIDEDDSDSIEKVLWHQPKGTAEDAERNNRSTEPVLMSHLFDSEIDWNEMEFLIKWKGQSHLHCQWKSFAELQNLSGFKKVLNYTKKIMEDMRYRRTISREEIEVNDVSKEMDLDIIKQNSQVERIIADRISKDNSGNVIPEYLVKWQGLSYAEATWEKDIDIAFAQHAIDEYKDREAAMAAVQGKMVDSQRKKSKASLRKLEEQPEWLKGGKLRDYQLEGLNFLVNSWRNDTNVILADEMGLGKTVQSVSMLGFLQNAQQIHGPFLVVVPLSTLSNWAKEFRKWLPDMNIIIYVGTRASREVCQQYEFYNEKRPGKPIKFNALLTTYEVVLKDKAFLSKIKWSYLMVDEAHRLKNSEAQLYTTLSEFSTKNKLLITGTPLQNSVEELWALLHFLDPDKFRSKDEFVQNYKNLSSFNENELANLHTELRPHILRRVIKDVEKSLPPKIERILRVEMSPLQKQYYKWILERNFHNLNKGVRGNQVSLLNIVVELKKCCNHPFLFESADHGYGGDSGSSDNSKLERIVFSSGKLVILDKLLVRLHETKHRVLIFSQMVRMLDILGEYMSLRGFQFQRLDGSTKAELRQQAMDHFNAPGSDDFCFLLSTRAGGLGINLATADTVIIFDSDWNPQNDLQAMSRAHRIGQQEVVNIYRFVTSKSVEEDILERAKKKMVLDHLVIQKLNAEGRLEKKEAKKGGSYFDKNELSAILRFGAEELFKEERNDEESKKRLLSMDIDEILERAEKVEEKEPDGEQGNELLSAFKVANFCNDEDDGSFWSRWIKPDSVFQAEEALAPRSARNIKSYAEVDPSERTNKRKKKEPEPPERVQKRRKAEYSVPAVPMIEGACVQVRNWSYGNLSKRDALRFSRSLMKYGNESQIDLIAAEVGGAVGAAPTGAQIELFNALIDGCTEAVELGNLDVKGPLLDFFGVPVKASDLLTRVQQLQLLAKRIDRYEDPIAQFRVLSYLKPSNWSKGCGWNQIDDARLLLGIYFHGFGNWEKIRLDERLGLTKKIAPVELQHHETFLPRAPNLKDRANALLEQELAVLGVKNANSKVGRKPSKKERDNIISLVRGQEKKKKSGSVNVQVRKDRFQKPQKVESIVKEEGEMSDNEEVYEQFKEVKWMEWCQDVMVEEMKTLKRLHRLQQTSANLPKEKVLSKIRNYLQLLGRRIDQIVLEHEEEPYKQDRMTVRLWKYVSTFSHLSGERLHQIYSKLRQEQDEAGVGPSHGNGSVSVSFTRNGNPFRVHMERQRGLKNMSTYQMPEAVDNSGKSEAWKRRRRAESDNQFQGQPPPQRNASNGLRITDPNSLGILGAGPSDKRFANEKPYRTQPGGFPSRQGFSSAIVHSVEFFSSTHGNKILRIPFWCLLADMRNIPALGFSSLNKMAEAEKIYNAR 1810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01020 1810 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 950 1101 IPR001650 -
Phco3g01020 1810 Gene3D - 410 537 - -
Phco3g01020 1810 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 642 814 IPR014001 -
Phco3g01020 1810 SMART DUF4208_2 1525 1630 IPR025260 -
Phco3g01020 1810 MobiDBLite consensus disorder prediction 367 393 - -
Phco3g01020 1810 Gene3D - 539 591 - -
Phco3g01020 1810 ProSiteProfiles Chromo and chromo shadow domain profile. 424 512 IPR000953 -
Phco3g01020 1810 SMART helicmild6 976 1060 IPR001650 -
Phco3g01020 1810 MobiDBLite consensus disorder prediction 196 214 - -
Phco3g01020 1810 SMART ultradead3 626 826 IPR014001 -
Phco3g01020 1810 Pfam Helicase conserved C-terminal domain 947 1060 IPR001650 -
Phco3g01020 1810 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 192 1690 - -
Phco3g01020 1810 MobiDBLite consensus disorder prediction 1221 1249 - -
Phco3g01020 1810 Gene3D - 621 860 IPR038718 -
Phco3g01020 1810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 854 1136 IPR027417 -
Phco3g01020 1810 MobiDBLite consensus disorder prediction 1 427 - -
Phco3g01020 1810 FunFam Photoperiod-independent early flowering 1 600 874 - -
Phco3g01020 1810 CDD CD2_tandem 535 591 - -
Phco3g01020 1810 Pfam SNF2-related domain 649 918 IPR000330 GO:0005524|GO:0140658
Phco3g01020 1810 CDD CD1_tandem 422 502 - -
Phco3g01020 1810 MobiDBLite consensus disorder prediction 1216 1249 - -
Phco3g01020 1810 Gene3D - 861 1091 IPR027417 -
Phco3g01020 1810 FunFam protein CHROMATIN REMODELING 5 isoform X2 539 591 - -
Phco3g01020 1810 ProSiteProfiles Chromo and chromo shadow domain profile. 537 601 IPR000953 -
Phco3g01020 1810 MobiDBLite consensus disorder prediction 126 162 - -
Phco3g01020 1810 SUPERFAMILY Chromo domain-like 420 504 IPR016197 -
Phco3g01020 1810 MobiDBLite consensus disorder prediction 275 292 - -
Phco3g01020 1810 MobiDBLite consensus disorder prediction 1700 1720 - -
Phco3g01020 1810 MobiDBLite consensus disorder prediction 394 427 - -
Phco3g01020 1810 CDD SF2_C_SNF 936 1071 - -
Phco3g01020 1810 Pfam Domain of unknown function (DUF4208) 1537 1629 IPR025260 -
Phco3g01020 1810 Coils Coil 1090 1110 - -
Phco3g01020 1810 MobiDBLite consensus disorder prediction 1685 1699 - -
Phco3g01020 1810 ProSitePatterns DEAH-box subfamily ATP-dependent helicases signature. 760 769 IPR002464 -
Phco3g01020 1810 Gene3D - 1357 1472 - -
Phco3g01020 1810 MobiDBLite consensus disorder prediction 1634 1750 - -
Phco3g01020 1810 MobiDBLite consensus disorder prediction 312 340 - -
Phco3g01020 1810 MobiDBLite consensus disorder prediction 105 125 - -
Phco3g01020 1810 MobiDBLite consensus disorder prediction 222 257 - -
Phco3g01020 1810 Pfam Chromo (CHRromatin Organisation MOdifier) domain 538 592 IPR023780 -
Phco3g01020 1810 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 617 851 IPR027417 -
Phco3g01020 1810 FunFam Chromodomain-helicase-DNA-binding protein 2 isoform 1 861 1091 - -
Phco3g01020 1810 SMART chromo_7 423 505 IPR000953 -
Phco3g01020 1810 SMART chromo_7 535 594 IPR000953 -
Phco3g01020 1810 Coils Coil 1144 1164 - -
Phco3g01020 1810 MobiDBLite consensus disorder prediction 1 40 - -
Phco3g01020 1810 SUPERFAMILY Chromo domain-like 516 592 IPR016197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01020 Phco-Chr3 8616151 8632626 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Phco3g01020 SNF2_N 2.8e-64 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01020 3 8616151 8632626 Phco3g01020 3 8616151 8632626 ECH