Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01013 ATGGAAGAATCAAGTGAACTGCAATCAGAAGAAAATAAAGTCTCCAATGAGAAAAATAAGAAAAGAAAGCTGAAAACACCAGCCCAGCTTACGGCCTTGGAGAAATTTTATGATGAGCACAAGTACCCGACAGAGGAAATGAAATTAGAACTTGCTGAGGAGTTAGGATTGACAGAAAAGCAAATATCTGGATGGTTTTGCCACAGAAGGCTAAAGGATAAAAGATTGATGAAAGACGAAGCTGTGGCTAATGGACGACAAGATCGTTCAAGTGGTGTCATCCAGGATCGCGGCAGTGGACTTGGGCAAGATTCTTGTGGAAGCAGTAAACATGCTGATTATAGGTATCTGGATCCTAAGGAGGTTGAGAGCCATGGCTTCTTCAATCACGAAATATCTGTTGCTGACATGACCCACAGACGTAGGAACCGTTATCCTGAAAATGTTAGTGGAGTGGATGACACATCATCTGAGAGCAGCTCTTTTTTGCAAGGAAGGGCGTTTGCTCAAGGTCAGGATCCATATGATATGGAACCTTCAAGACATCTTACACCTAACGGAGCTCTTCCACCCCTAAATCCCAAAGGTGCAGTTAACGTGGGATACAAGCCATCAGGATATTTGAAAGTGAAGGGCGAGATAGAACATGCTGCTATAACTGCTGTTAAGAAGCAATTAGGACGGCATTACAAGGAAGATGGTCCATTTCTTGGTATAGAATTTGATCAGCTTCCGCCTGGGGCCTTTGAGTGCCAAACTGAAGATCCAGCTAATGAACCATTCTGTGTAGCAAATCCTCCGCTTCTGAATTCTCCAGAAATATCTGCTGCAAAAAAACCCAATCTTAGCTCTAGATATGATTCGCATTATACTAAATTTAATTCCCAAGATTTGCATATGGGAGCTGACTTTGGCTCCTTGCATGAATCTGATTTCCAGGATAAACAAGATAAGAAAGCCCTTCAGAATATAAAACACAGGCAACCTTTTTACGGTTATAGCACTCATGTTTCTGGAAGGACCCCTTTCCCAGATTTGTATGAAGACTCTACTGGAGAAGCATCTGGCTATAACAGTGCTAAGAATCATAGAAAGAGCAATAAGCATGGGGTTGAGGGGATGCGATCTGATTCTGCTTCTAACCATAGTGATCACTTTGAAGAGAAGCTTGCGGTTAAGCCCAAAGACTTGATGCTGCATGGTTATGATAAGATCAATCCAAAGAGAATACAAAGGAGTGGACATGTAAAATCTAAACCTTCTAGTTCAATCCGTAATTCCCGTGTTCCCATGGATTCTGAAGAAAGGGGATTATCTGCTAGGATGGCAAAGGAAGAGATGTTTAAGGTGGGCCAGAAATCAAAAAATACATACCGCGATGTGGATGGAGCAGGGAGGCTTTCAAATGAAATCATGCTTGCAAAGCGGGCTAAAGTTGACATGCTTCAACAATACCATGTGAAACCGTCACCTGTTGCTGAGATGGAGCAAAGGAAAATTCAGAGATCTGCTGCAGAGATGCCTTCTAGCTTTAGTGAGGATGAAACTGCTGAAACCAGTTCCTCACTAGATTATTAA 1578 0.4227 MEESSELQSEENKVSNEKNKKRKLKTPAQLTALEKFYDEHKYPTEEMKLELAEELGLTEKQISGWFCHRRLKDKRLMKDEAVANGRQDRSSGVIQDRGSGLGQDSCGSSKHADYRYLDPKEVESHGFFNHEISVADMTHRRRNRYPENVSGVDDTSSESSSFLQGRAFAQGQDPYDMEPSRHLTPNGALPPLNPKGAVNVGYKPSGYLKVKGEIEHAAITAVKKQLGRHYKEDGPFLGIEFDQLPPGAFECQTEDPANEPFCVANPPLLNSPEISAAKKPNLSSRYDSHYTKFNSQDLHMGADFGSLHESDFQDKQDKKALQNIKHRQPFYGYSTHVSGRTPFPDLYEDSTGEASGYNSAKNHRKSNKHGVEGMRSDSASNHSDHFEEKLAVKPKDLMLHGYDKINPKRIQRSGHVKSKPSSSIRNSRVPMDSEERGLSARMAKEEMFKVGQKSKNTYRDVDGAGRLSNEIMLAKRAKVDMLQQYHVKPSPVAEMEQRKIQRSAAEMPSSFSEDETAETSSSLDY 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01013 525 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN 1 524 - -
Phco3g01013 525 MobiDBLite consensus disorder prediction 490 525 - -
Phco3g01013 525 SUPERFAMILY Homeodomain-like 18 83 IPR009057 -
Phco3g01013 525 Gene3D - 8 92 - -
Phco3g01013 525 MobiDBLite consensus disorder prediction 88 106 - -
Phco3g01013 525 MobiDBLite consensus disorder prediction 82 109 - -
Phco3g01013 525 MobiDBLite consensus disorder prediction 410 438 - -
Phco3g01013 525 MobiDBLite consensus disorder prediction 503 525 - -
Phco3g01013 525 ProSiteProfiles 'Homeobox' domain profile. 16 76 IPR001356 GO:0003677
Phco3g01013 525 MobiDBLite consensus disorder prediction 1 26 - -
Phco3g01013 525 Pfam Homeodomain 20 75 IPR001356 GO:0003677
Phco3g01013 525 MobiDBLite consensus disorder prediction 7 26 - -
Phco3g01013 525 MobiDBLite consensus disorder prediction 348 386 - -
Phco3g01013 525 SMART HOX_1 18 80 IPR001356 GO:0003677
Phco3g01013 525 CDD homeodomain 20 75 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01013 Phco-Chr3 8564753 8569371 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Phco3g01013 Homeodomain 2.3e-17 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01013 3 8564753 8569371 Phco3g01013 3 8564753 8569371 ECH
Phco11g02182 11 19336293 19340976 Phco3g01013 3 8564753 8569371 PCT