Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g01010 ATGATGGTGATGATGATGATGAAGAGAGAAAAGAAAGTTGTGGCTACTACAAGGAGGTTACCTTCAGATTCTGGTGCCTTTGCGGACTGGGCAGCGACTACTTCCTCCAGTGCTGGTGGTGGCCGTGCTGTCCCCGTCGACGACCTCTCCCTCGGCTTCAATGCGGGTCCTGCCGCCCCAGCAGCCGCAACCGGACCCACCGCCGGAATGTGGTCCGGCACCAATAGGTCTATCAATTACCCCGAAATGGGAATGTTCGTTGTGGCGCCAGCCTCATCGTTCCACCACCATCACCACCACCAGCAACCGCCCCCACACGACCCTGTCATGGCGGATTCCCTCAACCCCGCCACTGCACTCGGTGTCGGCGTCATCCCCCTGCTCGCCACCACCCCGTGTCTGGAACCTGACAACTTCCTAGGAAATAGGACACGCGGTGGGGGAATTCAGTTTTGGCAAGATCAAGCGCCCCATCAGAGCCATTACATGAAGAAGCAGCAGCAACAGGGGCTTCTAGACCAAAGTAACAGGAGTTCTGGAAATTTGGTTCAAAACAGTGGCGGTTTAACTGCTTCGGGTACTAGTAGTGGGGGAACAACGTGCCAAGATTGCGGAAACCAGGCCAAGAAAGATTGTACCAATAGAAGGTGTAGGACTTGTTGTAAAAGTCGAGGTTTCGATTGCCCTACCCATGTTAAGAGCACATGGGTTCCAGCGGCACGCCGGAGAGAGCGCCAGCTCATGACCACGGCTACTGTGGCGGTTGCTGGTTCCAGTGGCTCCACCTCTGGGACTAAAAAACCTAGACTCATTGCTTCACAAACCACTACAACATCTCACACTTCCACTTCTAACACCACCCCTCCTAGAAGCTTTGACACTAGCTCTAGCCATCAAGATGCGGGTTTCAAGGAGTCTTTACCTGGGCAAGTACGTGCACCAGCTGTTTTCAAGTGTGTTAGAGTGACGGCGGTGGAGGATGGACAAGATGAGTATGCGTATCAGGCTGTGGTAAAGATTGGTGGTCACGTGTTCAAAGGGTTTCTCTATGATCAAGGGGTGGAGAATAGGGATGTGTATCCAAACCTATCTGAGTTGCATTTGGGTGGTGGAAGTGGGAGTGGAGGCAGTGGTGGGGTGGGGAGAAATGGGGTTTCTTCTTCTCCAATGATGGATCCTTCTGATGTTTATGCAGCTTCGGGTGGAGGGTTACTTGGGGGTTCTTCTGCTTATGGTAATCCACTGAATTGA 1251 0.53 MMVMMMMKREKKVVATTRRLPSDSGAFADWAATTSSSAGGGRAVPVDDLSLGFNAGPAAPAAATGPTAGMWSGTNRSINYPEMGMFVVAPASSFHHHHHHQQPPPHDPVMADSLNPATALGVGVIPLLATTPCLEPDNFLGNRTRGGGIQFWQDQAPHQSHYMKKQQQQGLLDQSNRSSGNLVQNSGGLTASGTSSGGTTCQDCGNQAKKDCTNRRCRTCCKSRGFDCPTHVKSTWVPAARRRERQLMTTATVAVAGSSGSTSGTKKPRLIASQTTTTSHTSTSNTTPPRSFDTSSSHQDAGFKESLPGQVRAPAVFKCVRVTAVEDGQDEYAYQAVVKIGGHVFKGFLYDQGVENRDVYPNLSELHLGGGSGSGGSGGVGRNGVSSSPMMDPSDVYAASGGGLLGGSSAYGNPLN 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g01010 416 MobiDBLite consensus disorder prediction 93 114 - -
Phco3g01010 416 MobiDBLite consensus disorder prediction 369 394 - -
Phco3g01010 416 MobiDBLite consensus disorder prediction 253 303 - -
Phco3g01010 416 PANTHER PROTEIN LATERAL ROOT PRIMORDIUM 1 93 400 IPR007818 GO:0003700|GO:0006355
Phco3g01010 416 MobiDBLite consensus disorder prediction 253 307 - -
Phco3g01010 416 MobiDBLite consensus disorder prediction 166 208 - -
Phco3g01010 416 Pfam Domain of unknown function (DUF702) 198 355 - -
Phco3g01010 416 MobiDBLite consensus disorder prediction 166 209 - -
Phco3g01010 416 NCBIfam LRP1 C-terminal domain 307 354 IPR006511 -
Phco3g01010 416 NCBIfam putative zinc finger domain, LRP1 type 200 242 IPR006510 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g01010 Phco-Chr3 8502985 8505155 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SRS Phco3g01010 DUF702 1.8e-61 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g01010 3 8502985 8505155 Phco3g01010 3 8502985 8505155 ECH
Phco11g02177 11 19227968 19230391 Phco3g01010 3 8502985 8505155 PCT