Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00991 ATGGCTTTCACACTAGACAGGTGTGAAGATAGCATGGTGTTCACCATGGAGTCTCAGAAGTCAGTGCCTGCTCCCTTCCTGACAAAAACATACCAACTTGTTGATGACCCTTGCACAGACCACATTGTGTCTTGGGGTGATGATGAAACCACATTTGTTGTGAGGAGGCCCCCAGAATTTGCTAGAGATCTTCTTCCCAACTATTTCAAGCACAACAACTTCTCAAGCTTTGTTAGGCAGCTAAATACTTATGGTTTCAAGAAGGTAGCTGCTGATAGGTGGGAGTTTGCAAATGAATACTTCAGAAAAGGATCTAAGCACCTTCTATGTGAAATCCACAGGAGGAAAACCCCTCACCTCTATCAACAACATTACCATATGCATGACCAACCATCACAGCTTCTTCAGCCAGATGAGAATCTGTGTTGGATTGATACTCCTCCACTACCACCTCCACCAGGCAATGATATCTTAGCAGCTCTTTCTGAGGACAACCAAAGACTGAGGAGAAAGAACTTCATGCTCTTATCAGAACTCACTCACATGAAGAATCTATACAATGACATCATATACTTCATCCAAAACCATATAAGTCCTGCTTCCTATGAACAAAGAAACAGCAGTGCTATTCTGAAGCTGGTAGAATTGGAATCATCACCTCAAGCTCCAAATTTTATCAGACCAGCTAAGACCCATATCATGGAGAAGTCTTTGGTAAGTTCTAGTGATGAGCCTAATAGTTCTGTGAAGCTCTTTGGGGTTCCTCTTTGTGGCAAAAAGTGA 783 0.4253 MAFTLDRCEDSMVFTMESQKSVPAPFLTKTYQLVDDPCTDHIVSWGDDETTFVVRRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFKKVAADRWEFANEYFRKGSKHLLCEIHRRKTPHLYQQHYHMHDQPSQLLQPDENLCWIDTPPLPPPPGNDILAALSEDNQRLRRKNFMLLSELTHMKNLYNDIIYFIQNHISPASYEQRNSSAILKLVELESSPQAPNFIRPAKTHIMEKSLVSSSDEPNSSVKLFGVPLCGKK 260
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00991 260 PRINTS Heat shock factor (HSF) domain signature 26 49 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco3g00991 260 PRINTS Heat shock factor (HSF) domain signature 77 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco3g00991 260 PRINTS Heat shock factor (HSF) domain signature 64 76 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco3g00991 260 FunFam Heat stress transcription factor B-4 18 116 - -
Phco3g00991 260 Pfam HSF-type DNA-binding 26 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco3g00991 260 ProSitePatterns HSF-type DNA-binding domain signature. 65 89 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco3g00991 260 SUPERFAMILY "Winged helix" DNA-binding domain 23 115 IPR036390 -
Phco3g00991 260 SMART hsfneu3 22 115 IPR000232 GO:0003700|GO:0006355|GO:0043565
Phco3g00991 260 Gene3D - 18 117 IPR036388 -
Phco3g00991 260 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 17 228 IPR027725 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00991 Phco-Chr3 8346801 8347920 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Phco3g00991 HSF_DNA-bind 3.6e-32 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00991 3 8346801 8347920 Phco3g00991 3 8346801 8347920 ECH
Phco11g02410 11 29596570 29597868 Phco3g00991 3 8346801 8347920 PCT