Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00959 ATGAGGAAGAAACTGGATACTCGTTTCCCTGCGGCTGGTTTTGTCGGGGTTGCTTGTTTTGTTTCCTTGTGCAAATTGGTGTTTTTGGGCTTTGGAATTGTTTTGACCTTGAAATGTTATTATGTTAATGAATTATTTTTTAAAGAGAATGTTTTGCTGGTGAATATTGTTTTAGGAACTGTGCCCATTGGACGACAGAATGTTGGCAGCAGTACTTATTCCCCTTCTAACCTTTTTCCAAATTTGGCCAGGATTAAGAAAATTATGCAAGCTGATGAGGATGTAGGGAAGATTGCAATGGCTGTGCCACTTTTAGTTTCTAAAGCACTAGAGTTATTTCTGCAAGATTTGTGTGATCGAACATATGAGATAACTTTGAGGAGGGGAGCAAAGACTATGAATGCTTTTCATTTAAAACAGTGTGTGCAGACTTTTAATGTCTTTGACTTTCTGAAAGATATTGTCAGTAAGGTTCCTGATTTAGGTGGTTCTGTTGCAAATGGTGATGATCATACTGTCAAGAGGAGGAAAGTTTCTGAAGATGATAATGATAGCCACGAGGAGACCAAGAGAAGTAACAGGGCAGAGCCTGGTCATACAATTGGCAGAGGAAGGGGAAGGGGCAGAGGTAGGGGTCGTGGCCGTGGAATTAGAAATGTAGATCAAGAGATGAGTTCACATGCCAAGTGTGAGGAAGATTCTGATGCATTGAAGCAAAATGAAAAGCAGACTCAAAGCAATGAAAGCATGGAGCATGTGTCATCACCTGAAGAAGTTAAGCAGACTTTTCCGGTGAGCAAGCCGGCTCAAGTGTCCATTCGAAATTTTGACTTAAACATGGACCCAGACGAGAATATGGATTTGTTAGCATCACCAACTCCTGTCCCATCTAGTTCATCTGCAAAATCAATATCAGAAGAGAAGCATGATGAATACCCTGGATGGTCCTTGTCTGATATGGAAAAAATGACCATTGATCCCATTCAACTAGCTAACATAAATGGAAGGATTGATGAAGATGAAGAGGATTATGATGAAGAATTGTAA 1047 0.4021 MRKKLDTRFPAAGFVGVACFVSLCKLVFLGFGIVLTLKCYYVNELFFKENVLLVNIVLGTVPIGRQNVGSSTYSPSNLFPNLARIKKIMQADEDVGKIAMAVPLLVSKALELFLQDLCDRTYEITLRRGAKTMNAFHLKQCVQTFNVFDFLKDIVSKVPDLGGSVANGDDHTVKRRKVSEDDNDSHEETKRSNRAEPGHTIGRGRGRGRGRGRGRGIRNVDQEMSSHAKCEEDSDALKQNEKQTQSNESMEHVSSPEEVKQTFPVSKPAQVSIRNFDLNMDPDENMDLLASPTPVPSSSSAKSISEEKHDEYPGWSLSDMEKMTIDPIQLANINGRIDEDEEDYDEEL 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00959 348 FunFam dr1-associated corepressor homolog 76 157 - -
Phco3g00959 348 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 82 228 - -
Phco3g00959 348 MobiDBLite consensus disorder prediction 214 239 - -
Phco3g00959 348 Gene3D Histone, subunit A 70 157 IPR009072 GO:0046982
Phco3g00959 348 MobiDBLite consensus disorder prediction 169 203 - -
Phco3g00959 348 MobiDBLite consensus disorder prediction 161 266 - -
Phco3g00959 348 Coils Coil 330 348 - -
Phco3g00959 348 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 82 142 IPR003958 -
Phco3g00959 348 MobiDBLite consensus disorder prediction 284 318 - -
Phco3g00959 348 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Phco3g00959 348 SUPERFAMILY Histone-fold 89 159 IPR009072 GO:0046982
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00959 Phco-Chr3 8049707 8053102 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Phco3g00959 CBFD_NFYB_HMF 4.4e-16 CL0012
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00959 3 8049707 8053102 Phco3g00959 3 8049707 8053102 ECH