Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00953 ATGCACCACCATGCAAATGTAGTTCTTGAAGGTTTTGCTATGATATCTTTAAAAAGCTGTACTCTGTCCTCGTTCTCAGGTGAGGATAAAAGTAGTGATGAAAATAATCTAAAGAAGGGGCCATGGACCGCAGCAGAAGATGATATATTGGCAGAATATGTGAGAAGACATGGAACAGGAAATTGGAACATAGTGCAGAAAAACACTGGACTAGCTCGTTGTGGGAAAAGCTGTCGTTTAAGGTGGACAAATCATCTAAGACCAGATTTGAGAAGAGGTGCATTCAGCAATGAAGAACAACGCAAAGTGATTGAGTTACATGCTTTGATGGGAAATAAATGGGCTAAAATGGCACAGGAGCTGCCTGGACGAACAGACAATGAAATAAAGAACTTTTGGAACACTAGACTCAAGAAAAGGAAACGAGTTGGCCTAGGAATCTACCCAGATGACATAAAACCTGTGTTTAATGCTCACAACTCAGAAACTGATCAACCTACTTACACTCACTCTGCCAATGACTCGGGAGTAGGCTCATCATCTTGTGTATCACGTGAGGTCTTCAACAATTTCAACACTCCAAATCAACCACATTTTGTACCACCAATTTCTGAGGTACCTGCAGACATGCAATGTCTGAAGGTACCTCAAGAGATGATGCAACTGTCCGAGGTACCTGAGGAGATGATGCAACTGTCCGAGGTACCTGAGGAGATGATGCGAATGTCCGAGGTACCTGAGGAGATGCTACTTCAAGAGTATGATGAGTTCTTGGAAGATTTCATGTATGGTGGTGACTATGAATGTTCAGGTGGCCCTTCTTCGATATCAGAGTTGCCTCCATTGCCATCATCACGTGATGCATTACCATTTGAGGAGTCAATGGTGGTAGTGAGGGAGGTTCCTCAGGCTGAGACTAACCAGCACTATATACCACGTTCTCCACGCAGCAATGGATATTTGGAGTCTATATTTTATCCACCAAAGGTTTCTCAAGAACCAGAGAATTACTCGAACATGCAAGGGGAGTTAAATGCGGGAAATAGAGAAAATTCTTCTGAGCAGAGAAAACATGAAAATGAAGATATTTTAAGTAACTTCATTTGGGTAGAGGAAGATCGTAGTGATCCAATTAAGGATACTTTATACAGCGTTATCCATCCCTTTTTCCCACGTTAA 1179 0.4207 MHHHANVVLEGFAMISLKSCTLSSFSGEDKSSDENNLKKGPWTAAEDDILAEYVRRHGTGNWNIVQKNTGLARCGKSCRLRWTNHLRPDLRRGAFSNEEQRKVIELHALMGNKWAKMAQELPGRTDNEIKNFWNTRLKKRKRVGLGIYPDDIKPVFNAHNSETDQPTYTHSANDSGVGSSSCVSREVFNNFNTPNQPHFVPPISEVPADMQCLKVPQEMMQLSEVPEEMMQLSEVPEEMMRMSEVPEEMLLQEYDEFLEDFMYGGDYECSGGPSSISELPPLPSSRDALPFEESMVVVREVPQAETNQHYIPRSPRSNGYLESIFYPPKVSQEPENYSNMQGELNAGNRENSSEQRKHENEDILSNFIWVEEDRSDPIKDTLYSVIHPFFPR 392
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00953 392 Gene3D - 94 140 - -
Phco3g00953 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 87 141 IPR017930 -
Phco3g00953 392 MobiDBLite consensus disorder prediction 332 349 - -
Phco3g00953 392 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 27 349 - -
Phco3g00953 392 CDD SANT 94 137 IPR001005 -
Phco3g00953 392 SMART sant 91 139 IPR001005 -
Phco3g00953 392 SMART sant 38 88 IPR001005 -
Phco3g00953 392 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 34 86 IPR017930 -
Phco3g00953 392 ProSiteProfiles Myb-like domain profile. 34 86 IPR001005 -
Phco3g00953 392 Pfam Myb-like DNA-binding domain 42 102 - -
Phco3g00953 392 FunFam MYB-related transcription factor 38 91 - -
Phco3g00953 392 SUPERFAMILY Homeodomain-like 36 133 IPR009057 -
Phco3g00953 392 MobiDBLite consensus disorder prediction 331 358 - -
Phco3g00953 392 Gene3D - 38 91 - -
Phco3g00953 392 CDD SANT 41 86 IPR001005 -
Phco3g00953 392 ProSiteProfiles Myb-like domain profile. 87 137 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00953 Phco-Chr3 8017050 8019742 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Phco3g00953 Myb_DNA-bind_6 3.9e-14 CL0123