Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00947 ATGGGAAACTGCTGCAGAAAACCAGTGGCTCATGTGTCTTCCACAAGTTTCTTTGGAAGCTCAAAGTCTCGAAGTAAGACAAAACAGAACTCAAATTCTACTGAAGGAAAAGCTCCTTTAAAAGCTTCAGCATCAAATGTTGGCAAACCCATCTCCAATAACCTTAAGTCCTTCACCTTCAATGAACTAAAAGAGGCCACTAAGAACTTCAGGCAAGAAAACTTAATTGGAGAAGGAGGGTTTGGGTTTGTATACAAGGGATGGATAGATAAGAGCACTTATGCTCCCACAAAACCAGGGATTGGAATTGTAGTGGCCATCAAGAAACTTAAACGAGAAAGTTTTCAAGGTCACAGAGAATGGTTGGCAGAAGTCAATTATCTAAGCCAGCTTCACCATGAAAATCTGGTGAAACTTATTGGTTACTGCTCAGATGGTAAAAACAGGCTTCTAGTTTATGAGTTTATGCATAAAGGAAGTTTGGAAAATCATTTATTCAGAAAAGGTGTTCAGCCTATTCCCTGGACTACCCGGATCAACATTGCAGTTGCTGTTGCAAGAGGATTAACATTTTTACATACCCTAGATGCAAATGTTATTTATCGTGATTTAAAGGCAGCCAACATCCTACTTGATTCGGATTTTAACCCAAAGCTTTCGGATTTTGGCTTGGCAAGAGATGGTCCTACAGGAGACAACACTCATGTTTCCACCAGAGTTATTGGATCTCATGGTTATGCTGCACCAGAGTATGTAGCCACAGGTCATTTGACCCCAAGGAGTGATGTGTACAGCTTTGGAGTTGTGTTGTTAGAGTTACTAACAGGAAGGCGTGTAGTTGAAGATGAGAGACATGGATTTTCAGAAGAAACACTGGTGGATTGGGCAAGGCCATTCCTGAGTGATAGCAGAAGAATTTTGAGAATCATGGACACAAGGTTAGGTGGTCAATACTCCAAGAAAGGAGCACAAGCAGCAGCAACACTTGCACTGCAATGTCTAAATACAGATCCCAAATGCAGACCAACTATGGTAAATGTTCTAGCTGCACTGGAAACACTAAATTCCTCAAATTCATTCCCAAGGACCCCAAAATCTGGAACTGAGAATCATACAACAAAGCATTCTAGTCATTCCCAAAAATCAGCTACAAATAATAACAGACTATGA 1170 0.4068 MGNCCRKPVAHVSSTSFFGSSKSRSKTKQNSNSTEGKAPLKASASNVGKPISNNLKSFTFNELKEATKNFRQENLIGEGGFGFVYKGWIDKSTYAPTKPGIGIVVAIKKLKRESFQGHREWLAEVNYLSQLHHENLVKLIGYCSDGKNRLLVYEFMHKGSLENHLFRKGVQPIPWTTRINIAVAVARGLTFLHTLDANVIYRDLKAANILLDSDFNPKLSDFGLARDGPTGDNTHVSTRVIGSHGYAAPEYVATGHLTPRSDVYSFGVVLLELLTGRRVVEDERHGFSEETLVDWARPFLSDSRRILRIMDTRLGGQYSKKGAQAAATLALQCLNTDPKCRPTMVNVLAALETLNSSNSFPRTPKSGTENHTTKHSSHSQKSATNNNRL 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00947 389 CDD STKc_IRAK 76 354 - -
Phco3g00947 389 ProSiteProfiles Protein kinase domain profile. 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00947 389 PANTHER OS01G0588500 PROTEIN-RELATED 25 355 - -
Phco3g00947 389 MobiDBLite consensus disorder prediction 15 46 - -
Phco3g00947 389 Coils Coil 384 389 - -
Phco3g00947 389 ProSitePatterns Protein kinases ATP-binding region signature. 76 109 IPR017441 GO:0005524
Phco3g00947 389 SUPERFAMILY Protein kinase-like (PK-like) 50 358 IPR011009 -
Phco3g00947 389 SMART serkin_6 70 354 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00947 389 Pfam Protein kinase domain 71 348 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00947 389 MobiDBLite consensus disorder prediction 356 389 - -
Phco3g00947 389 FunFam Serine/threonine-protein kinase BIK1 38 155 - -
Phco3g00947 389 Gene3D Phosphorylase Kinase; domain 1 45 155 - -
Phco3g00947 389 FunFam PTI1-like tyrosine-protein kinase 3 156 362 - -
Phco3g00947 389 Gene3D Transferase(Phosphotransferase) domain 1 156 378 - -
Phco3g00947 389 ProSitePatterns Serine/Threonine protein kinases active-site signature. 199 211 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00947 Phco-Chr3 7979794 7983228 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Phco3g00947 Pkinase 2.7e-48 CL0016