Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Phco3g00946 | ATGAGTCAGCCGAAGATCAAGCGCCGAGTTGGTAAATACGAGGTGGGGAGGACAATTGGTGAAGGTACATTTGCAAAGGTGAAATTTGCAAGGAACTCTGAGACAGGAGAACCTGTGGCTCTTAAAATTCTTGACAAGGAGAAGGTGCTCAAGCACAAGATGGCTGAGCAGATCAGGAGAGAGGTGGCTACAATGAAATTAATCAAGCATCCACATGTTGTTCAATTGTATGAGGTCATGGGAAGCAAGACAAAAATATATATTGTTTTGGAGTTTGTGACTGGTGGGGAGCTCTTTGACAAAATTGTAAACCATGGACGGATGAGTGAAAATGAAGCACGTAGATATTTCCAACAGCTTATAAATGCTGTTGATTATTGCCACAGCAGGGGTGTCTACCACAGAGACCTGAAGCCGGAGAATTTGCTCTTAGATACTTATGGGAACCTTAAAGTTTCCGATTTTGGATTGAGTGCCCTCTCGCAGCAAGTTAGGGATGATGGGCTTCTCCATACTACATGCGGGACACCAAATTATGTTGCTCCAGAGGTCCTTAATGATAGAGGATATGATGGGGCAACTGCAGACTTGTGGTCATGTGGGGTGATTCTCTTTGTATTGGTTGCAGGTTACTTACCTTTTGACGACCCTAATCTTATGAACCTGTATAAGAAAATCTCAGCTGCTGAATTTACTTGCCCCCCGTGGCTCTCTTTCACTGCCAGGAAATTGATTACACGAATCTTGGATCCCGATCCCACAACTCGTATCACTATACCTGAGATTTTGGATGATGAATGGTTTAAGAAAGATTATAAGCCTCCAGTTTTCGAGGAGAATGGGGAAACCAACCTAGATGATGTTGAGGCTGTCTTTAAAGATTCTGAAGAGCACCATGTGACAGAGAAGAAAGAAGAGCAGCCAACGGCCATGAATGCGTTTGAGTTAATTTCCATGTCCAAAGGGCTGAACCTTGAAAACTTGTTTGATACAGAGCAGGGGTTCAAAAGGGAAACAAGATTCACATCAAAATCACCTGCAGATGAGATAATCAACAAGATTGAGGAAGCTGCAAAACCTCTTGGCTTTGATGTGCAGAAGAAAAATTACAAGATGAGGCTTGCAAATGTGAAAGCTGGAAGGAAGGGAAACCTTAATGTTGCCACTGAGATATTTCAAGTGGCACCTTCTCTTCACATGGTTGAGGTACGGAAGGCAAAAGGAGATACATTGGAGTTCCATAAGTTCTACAAAAAGCTTTCAACAAGCCTGGATGATGTTGTTTGGAAAACAGAAGATGATATGCAAATGAGAGAAACAAATTGA | 1326 | 0.4246 | MSQPKIKRRVGKYEVGRTIGEGTFAKVKFARNSETGEPVALKILDKEKVLKHKMAEQIRREVATMKLIKHPHVVQLYEVMGSKTKIYIVLEFVTGGELFDKIVNHGRMSENEARRYFQQLINAVDYCHSRGVYHRDLKPENLLLDTYGNLKVSDFGLSALSQQVRDDGLLHTTCGTPNYVAPEVLNDRGYDGATADLWSCGVILFVLVAGYLPFDDPNLMNLYKKISAAEFTCPPWLSFTARKLITRILDPDPTTRITIPEILDDEWFKKDYKPPVFEENGETNLDDVEAVFKDSEEHHVTEKKEEQPTAMNAFELISMSKGLNLENLFDTEQGFKRETRFTSKSPADEIINKIEEAAKPLGFDVQKKNYKMRLANVKAGRKGNLNVATEIFQVAPSLHMVEVRKAKGDTLEFHKFYKKLSTSLDDVVWKTEDDMQMRETN | 441 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Phco3g00946 | 441 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 132 | 144 | IPR008271 | GO:0004672|GO:0006468 | |
| Phco3g00946 | 441 | ProSiteProfiles | NAF domain profile. | 306 | 330 | IPR018451 | GO:0007165 | |
| Phco3g00946 | 441 | SMART | serkin_6 | 13 | 268 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco3g00946 | 441 | Gene3D | Phosphorylase Kinase; domain 1 | 4 | 92 | - | - | |
| Phco3g00946 | 441 | CDD | CIPK_C | 312 | 421 | - | - | |
| Phco3g00946 | 441 | FunFam | Non-specific serine/threonine protein kinase | 4 | 92 | - | - | |
| Phco3g00946 | 441 | ProSiteProfiles | Protein kinase domain profile. | 13 | 268 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco3g00946 | 441 | SUPERFAMILY | Protein kinase-like (PK-like) | 9 | 286 | IPR011009 | - | |
| Phco3g00946 | 441 | CDD | STKc_SnRK3 | 12 | 267 | - | - | |
| Phco3g00946 | 441 | Gene3D | Kinase associated domain 1, KA1 | 305 | 430 | - | - | |
| Phco3g00946 | 441 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 10 | 419 | - | - | |
| Phco3g00946 | 441 | FunFam | Non-specific serine/threonine protein kinase | 6 | 309 | - | - | |
| Phco3g00946 | 441 | FunFam | Non-specific serine/threonine protein kinase | 305 | 430 | - | - | |
| Phco3g00946 | 441 | Pfam | Protein kinase domain | 13 | 268 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
| Phco3g00946 | 441 | ProSitePatterns | Protein kinases ATP-binding region signature. | 19 | 42 | IPR017441 | GO:0005524 | |
| Phco3g00946 | 441 | Pfam | NAF domain | 308 | 367 | IPR004041 | GO:0007165 | |
| Phco3g00946 | 441 | Gene3D | Transferase(Phosphotransferase) domain 1 | 93 | 296 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Phco3g00946 | Phco-Chr3 | 7952748 | 7957886 | Wgd |
Transcription factors information