Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00910 ATGGGAGAAGGAAGTGACCATCAAGCTATGGCAGATGATGGGAATGTTGAACATATTGAAGGTGGAGTTAATAATGCTGAAAACAACTCTGGTTCTCATGTTGAGGTTGGGGTTTCTGAGCCATATGTGGGTAGGGAGTTTGATTCTGAAGATGCTGCAAAGATTTTCTACAATGAGTATGCCAGACGAGTGGGTTTCAGCTGCAAAGCTGGCTCACACGGTCGTACCAAAGCCGATGGGGAAAATATGTACTGGGAATTTGTCTGTGGCAGGGAGGATTTGAAAAGAAAGCTTGCTGAAAGTTGCACTGCAATGATTAGGATCGAGAAGAAGGGTCAAAATAAGTGGGTTGTTACACAATTTGTAAAGGAGCATAGTCATTCCATGGCAAGCCTTAGTAAGGTGCATAGTATTAGGCCACGCAGACACTTTTCTAGTGTGGGAAGAACCATGCCTGAAACTTACCAAGGAGTGGGGCTTGTTCCAAGCGGTGTGATGTATGTATCTATGGATAAGAATTGTATTCCCACTAAGACTATCCACGGGATTAGAAATATTCCTGCAGTTGCTACTATTTCTGAAACAGCTCACCTTGTTAAAAGTCCGTCAATGATGAATTATGCTGTTAGGCCACCTATTCAAAAGAGGACATTAGGGAGGGATGCTCACAACCTGCTGGAGTACTTTAAGAAAATGCAAGCTGAGAACCCTGGTTTCTTCTATGCAATACAACTTGATGATGATAATCACATGTCTAATGTGTTTTGGGCAGGTGCGAGATCAAGGACTGCTTACGGTCATTTTGGTGATGCAGTTACTATGGACACAACTTACAGAATAAATCAATATAGAGTGCCCTTTGCTCTGTTCACTGGGGTAAACCATCATGGTCAGATGATCTTGTTTGGTTGTGCACTCCTCTTGGATGATTCTGAGGCTTCTTTTGTCTGGCTCTTCAAGACATTTTTGACAGCGATGAATGACCGTTACCCTGTCTCTATCACTACTGATCAAGACAGAGCTATACAAACAGCAATTTCACAAGTTTTTCCTCAAACACGCCACTGTATAAGCAAATGGCATGTCTTGCGAGAAGGCCATGAGAAGTTGGCCTATGTATGCAACATGCATCCAAATTTTCAGATTGAACTATATAATTGTATTAATCTGACTGAAACAATTGAGGAGTTTGATTCATGTTGGAATTTCATCATGAATAAATATGAACTCACAAAAAATGATTGGCTTCAGTCGTTGTACAATGCTCGTGCACAATGGGTTCCAGCATACTTTCGTGATTCATTTTTTGCAGTAATATCTCCTAATCAAGGAATTGATGGCTCTTTTTTCTATGGTTTTGTCAACCATCAAGCAACATTACCAGTGTTCTTTAGGCAGTATGAACAAGCTTTAGAGAACTGGTTTGAAAAAGAATTAGAAACAGATTTTGAGACAATTTCCTCCACCCCTGTCCTGAAGACACCTTCCCCAATGGAGAAGCAGGCTGCTAATCTCTATACCCGGAAAATATTTTCAAAGTTTCAAGAAGAGCTAGTCGAAACCTTTGCTTATACAGCCAACAGAATTGAAGAAGATGGAGAAAGTAGCATATTCAGGGTTGCAAAATTTGACGATGACCAAAAGGCTTATGTTGTCACGTTAAACCTTTCTGAGTTGAGAGCTGACTGTAGTTGCCAAATGTTTGAGTATTCAGGCATTCTATGTAGACATGTTCTAACTGTTTTTACTGTGACTAATGTACTTACATTACCGTCTCATTATATTTTAAAACGGTGGACAAGAAATGCAAAAAGCAGTGCTGGGTCAGTTGAACATGCTGGTGAATCGCATGTACACGATTCTTTGGCATCACGATATAGCAATCTTTGTTGGGAAGCCATCAAATATGCTGAAGAAGGGGCAATGAATGTGGAAACACATGATACTGCAATTGGTGCTCTTAGAGAAAGTGCAAAGAAGATTTCTTTCATGAAGAGAAGTGTTGCCAAAGTTTCCCCACCTAGTCATCCCGTCAGTCGGACTGCTTATGATGACAGAAAATCCCCAACTTCAACAGCAGATACAAACCCTCTTTTGTGGCCACAGCAGGATGAAACAACAAAGAGGTTTAACCTTAATGATGCTAGTACTCCTGTTCAATCAGTTGCTGATTTAAATTTACCGCGAATGACCCCAGTGTCTCTTCAGCGTGATGATGGTCCACCTGAAAACATGGTGGTCTATCCCTGTCTGAAATCATTGACATGGGTAATGGAGAACAAGAACTCAACACCAGGGAATAGAGTGGCTGTTATCAATCTTAAGTTGCAAGATTATAGCAGGAATCCATCAACAGAATCGGAAGTTAAGTTTAATCTCTCAAAAGTTACTTTGGAACCGCTGTTTAACCATATGGTCAACATCAGAGATCAGCTTTCTGCACCAACTAGGAAGTTTGCTGTATTAAATCTTAAGCTTCCAGTTGCCGATACAAATACTGGTGCGTGTGAAGTCAAGTTTCAGGTGTCCAAGGAAACATTAGTTGCTGTACTACGATCAATGGAATACATACGTGAGCAACTCTCTGTTCCTGGCGATGCGCAAACAGAAGCTATATCAAAAAGACCTCGGAAGTGA 2637 0.4092 MGEGSDHQAMADDGNVEHIEGGVNNAENNSGSHVEVGVSEPYVGREFDSEDAAKIFYNEYARRVGFSCKAGSHGRTKADGENMYWEFVCGREDLKRKLAESCTAMIRIEKKGQNKWVVTQFVKEHSHSMASLSKVHSIRPRRHFSSVGRTMPETYQGVGLVPSGVMYVSMDKNCIPTKTIHGIRNIPAVATISETAHLVKSPSMMNYAVRPPIQKRTLGRDAHNLLEYFKKMQAENPGFFYAIQLDDDNHMSNVFWAGARSRTAYGHFGDAVTMDTTYRINQYRVPFALFTGVNHHGQMILFGCALLLDDSEASFVWLFKTFLTAMNDRYPVSITTDQDRAIQTAISQVFPQTRHCISKWHVLREGHEKLAYVCNMHPNFQIELYNCINLTETIEEFDSCWNFIMNKYELTKNDWLQSLYNARAQWVPAYFRDSFFAVISPNQGIDGSFFYGFVNHQATLPVFFRQYEQALENWFEKELETDFETISSTPVLKTPSPMEKQAANLYTRKIFSKFQEELVETFAYTANRIEEDGESSIFRVAKFDDDQKAYVVTLNLSELRADCSCQMFEYSGILCRHVLTVFTVTNVLTLPSHYILKRWTRNAKSSAGSVEHAGESHVHDSLASRYSNLCWEAIKYAEEGAMNVETHDTAIGALRESAKKISFMKRSVAKVSPPSHPVSRTAYDDRKSPTSTADTNPLLWPQQDETTKRFNLNDASTPVQSVADLNLPRMTPVSLQRDDGPPENMVVYPCLKSLTWVMENKNSTPGNRVAVINLKLQDYSRNPSTESEVKFNLSKVTLEPLFNHMVNIRDQLSAPTRKFAVLNLKLPVADTNTGACEVKFQVSKETLVAVLRSMEYIREQLSVPGDAQTEAISKRPRK 878
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00910 878 MobiDBLite consensus disorder prediction 672 699 - -
Phco3g00910 878 SMART 26again6 561 588 IPR006564 GO:0008270
Phco3g00910 878 ProSiteProfiles Zinc finger SWIM-type profile. 550 586 IPR007527 GO:0008270
Phco3g00910 878 Pfam SWIM zinc finger 550 584 IPR007527 GO:0008270
Phco3g00910 878 Pfam FAR1 DNA-binding domain 56 129 IPR004330 -
Phco3g00910 878 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 26 662 IPR031052 GO:0006355
Phco3g00910 878 MobiDBLite consensus disorder prediction 684 699 - -
Phco3g00910 878 Pfam MULE transposase domain 272 363 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00910 Phco-Chr3 7645518 7649735 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Phco3g00910 MULE 1.2e-24 CL0219
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco3g00910 3 7645518 7649735 Phco3g00910 3 7645518 7649735 ECH
Phco11g02334 11 24762366 24774129 Phco3g00910 3 7645518 7649735 PCT