Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00874 ATGAGACTAAGAAGCAACACTGTTGATGCACAGAAGGAGGAAGGCTATAGAGCCAAGAGCCCAAAAATCCCTATTGTTCTGACTGACTATCCATTTGGGTTCTTTGGAGTTTTCTATAAAAAAAGACTCAGATTTTTTAGCTTCATTTCCGGGAGTACTCTCTGGACAATTATATGCAGTGCTCTTTTTGAGAAAACAGTAAGGTGGGGACTAGGAACAACTGATCCAAGCCAAAGAGGGTTTGGAGGGAACAGCTGCAGTGAGCTTTCTGAGATGGACATGATGAACATGGAAACTAATAGGAAGTTTCTTTCTCTGCCTCTTAGTAACAATTCTGGTGCTCAAATGCGCAGTGATAGAAGAGTACCTGTCGCTACCAACAGCATCGCCCAGGATCATCACTACACCCACCACAACCCCACCGACACTTGCAGTGTGAGGGATAAAATCATGGCACATCCTCTTTTTCCTCGTCTCTTGTCGTCTTACCTCAGTTGCCTAAAGGTTGGAGCGCCTCCTGATGTGGTGGCTAGCTTAGAGGAGTCGTGTGCCAAATGTGAATCCATCAATGCATCGTCAGGAAGGACAGGAAGTGGTTCTATAGGTGAAGATCCAGCCCTGGACCAGTTCATGGAGGCCTATTGTGAGATGCTCATTAAGTATGAGCAAGAGCTTACCAAACCCTTTAAAGAAGCGATGCTTTTTTTCTCAAGAATTGAGTGTCAGCTCAAAGCCCTAGCAGTTTCATCAGATTTTGGTCAAAGTGAATCATCATCACAGAATGAGGTTGATGTGCATGAAAACAACCTAGACACTCAAGCTGAAGATCGGGAACTGAAAGTCCAGCTTCTGCGCAAGTATAGCGGATATCTAGGGAGCCTCAAGAAGGAATTTTTGAAGAAGAAAAAGAATGGAAAGTTGCCAAAGGAAGCTCGGCAACAACTGCTTGATTGGTGGAACCGGCATTACAAGTGGCCCTACCCTTCGGAATCACAAAAGCAGGCGCTGGCAGAATCCACAGGCCTAGATCTGAAACAGATCAACAACTGGTTCATCAATCAGAGAAAACGTCATTGGAAACCTTCTGAGGATATGCAGTTTGCCGTGATGGATGCAACTAACTACTACATGGAAAATGTTATGTGCAAGCCATTTCCTATGGATGGCATGCCCATGCTTCTTTAA 1185 0.4473 MRLRSNTVDAQKEEGYRAKSPKIPIVLTDYPFGFFGVFYKKRLRFFSFISGSTLWTIICSALFEKTVRWGLGTTDPSQRGFGGNSCSELSEMDMMNMETNRKFLSLPLSNNSGAQMRSDRRVPVATNSIAQDHHYTHHNPTDTCSVRDKIMAHPLFPRLLSSYLSCLKVGAPPDVVASLEESCAKCESINASSGRTGSGSIGEDPALDQFMEAYCEMLIKYEQELTKPFKEAMLFFSRIECQLKALAVSSDFGQSESSSQNEVDVHENNLDTQAEDRELKVQLLRKYSGYLGSLKKEFLKKKKNGKLPKEARQQLLDWWNRHYKWPYPSESQKQALAESTGLDLKQINNWFINQRKRHWKPSEDMQFAVMDATNYYMENVMCKPFPMDGMPMLL 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00874 394 Pfam KNOX1 domain 146 187 IPR005540 GO:0003677|GO:0005634
Phco3g00874 394 Pfam Homeobox KN domain 318 357 IPR008422 GO:0003677|GO:0006355
Phco3g00874 394 ProSitePatterns 'Homeobox' domain signature. 336 359 IPR017970 GO:0000981|GO:0006355
Phco3g00874 394 SMART HOX_1 300 365 IPR001356 GO:0003677
Phco3g00874 394 Gene3D - 296 369 - -
Phco3g00874 394 ProSiteProfiles ELK domain profile. 278 298 IPR005539 GO:0003677
Phco3g00874 394 SMART ELK_2 278 299 IPR005539 GO:0003677
Phco3g00874 394 Pfam ELK domain 278 299 IPR005539 GO:0003677
Phco3g00874 394 Pfam KNOX2 domain 200 246 IPR005541 GO:0003677|GO:0005634
Phco3g00874 394 SUPERFAMILY Homeodomain-like 300 372 IPR009057 -
Phco3g00874 394 SMART KNOX1_2 144 188 IPR005540 GO:0003677|GO:0005634
Phco3g00874 394 CDD homeodomain 310 362 IPR001356 GO:0003677
Phco3g00874 394 SMART KNOX2_2 197 248 IPR005541 GO:0003677|GO:0005634
Phco3g00874 394 ProSiteProfiles 'Homeobox' domain profile. 298 361 IPR001356 GO:0003677
Phco3g00874 394 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 194 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00874 Phco-Chr3 7354913 7359093 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Phco3g00874 KNOX2 5.8e-22 No_clan