Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco3g00869 ATGGCCACAGTGGTGTGGCCCGCAGCCGCCGTAACACTGTTCCTCCTCCTCTGTTCCTCCATCCCAAAATCTGAATCCCAACAAGAGTACGTCAACAACAAACAACTAAGTTGCTCCGAGCAGGAAACCAACGCCACATATGGCAACCTCTGCAACAGTGTTCCATCATGCACATCCTACCTCACCTTCAAATCTTCCCTTCCAGATTACAACACCCCTATCTCCATCTCTTACCTCCTCAATTCCAACACCACTGCCATCGCTGCCGCAAACAACATCACCGATGTCCAATCCATCCCCGTCGACACCCTCATCACCGTCCCTATCAGCTGCTCCTGCTCCGGCCTCTACTATCAGCACAACGCCTCTTACACCATCAAGATACAGGGCGAAACATACTTCTCCATCTTCAACAACACCTACCAGTCCCTCACCACGTGTCAGGCTCTCATGAACCAAAACAACTACAGCGCACAAAACCTCGTCGCCGGTCTCAACCTCCACGTGCCTCTCAGGTGCGCCTGCCCCACCCAGAAGCAGAGCGAAGCAGGGTTCAAGTACTTGCTCACTTACTTGGTCTCTCAAGGAGAAACGGTTTCTTCCATTGCTGAAATCTTTGGTGTTGACCAACAGAGCATCAAGGAAGCAAACAAGCTTTCTGATAGTTCCTTTATTTACTACTTCACACCGATTTCAGTTCCTTTAAGAACAGAGCCACCGACAAATTTAATGGGAGCAACGGCTCCCCCGGAAGACTCCCCGTCGCCGCCGCCTCCGGCGGCGGACGGAGATTCGGACTCTTCCAAGAAATGGGTCATTGTCGGAATAGTGGTTGGGATTGTTGTGCTGCTGCTTCTCTGCGCTGCTCTATTTTTCTTCTGTTTCTATCGGCAGAGACGGGTACAACGGCCATCTCCGACTCCAGCGGCGAAGGCTTTCTCGGGCTCCACCCACAAACAGAGCGAAGAAATGACTATTCCGACGACGCAGTCGTGGTCTCTTTCTTCGGAAGGGATTCGTTACGCGATTGAGTCGTTGAGTGTGTACAAGTTTGACGAGTTGCAGAAGGCTACGGGGTTCTTCAGTGAAGAGAACAAAATCAAGGGTTCTGTTTATAGGGCTTCTTTCAAGGGTGATTATGCTGCGGTTAAGATTCTCAAAGGGGATGTGTCGGGTGAGATCAACATTCTCAAGAGGATTAACCACTTCAATGTCATAAGATTGTCGGGTTTTTGTGTTCACAAAGGTGACACCTATCTTGTGTACGAGTTTGCTGAGAATGATTCTCTCGAGGATTGTCTTCATAGTGGTTGTAAGAAGTACGAGAATTCGGTGTCTCTGAGTTGGGTGCAGAGGGTTCATATTGCTCATGATGTTGCTGACGCGCTTAATTACCTTCATAACTATACTAGTCCACCTCACGTGCATAAGAATTTGAAGAGTGGGAACGTGCTTTTAGATGGGAATTTCAGGGCAAAGGTTTCGAATTTTGGGTTGGCGAGAACGGTGGAGGGTGAAGGGGGTGATGGGGGATTTCAATTGACAAGGCATGTGGTGGGGACTCAAGGGTACATGTCACCTGAGTATATTGAGAATGGTTTGATTACTCCAAAGATGGATGTTTTTGCGTTTGGGGTTGTGCTTTTGGAGCTTCTTTCGGGGAGAGAGGCTGTTGGTGGGGATAAGAATGGATCTGGGGACAAGATGCTATCGGTGACTGTGAATCAGGTGCTTGAAGGAGAGAACGTTAAAGAGAAACTTCGAGGTTTCATGGATCCAAATCTGAGAGATGAATATCCTTTGGAACTGGCTTATTCCATGGCTGAACTTGCCAAACGCTGTGTTGCTCGTGACCTCAATTCAAGGCCACAGATTTCTGAGGTTTTCATGACTTTGTCTAAAATTCAATCCTCTACGTTGGATTGGGATCCGTCTGATGAGCTTGAACGGTCTAGATCTGTCAGCCAAATCTCTGATAGCAGATAG 1986 0.4844 MATVVWPAAAVTLFLLLCSSIPKSESQQEYVNNKQLSCSEQETNATYGNLCNSVPSCTSYLTFKSSLPDYNTPISISYLLNSNTTAIAAANNITDVQSIPVDTLITVPISCSCSGLYYQHNASYTIKIQGETYFSIFNNTYQSLTTCQALMNQNNYSAQNLVAGLNLHVPLRCACPTQKQSEAGFKYLLTYLVSQGETVSSIAEIFGVDQQSIKEANKLSDSSFIYYFTPISVPLRTEPPTNLMGATAPPEDSPSPPPPAADGDSDSSKKWVIVGIVVGIVVLLLLCAALFFFCFYRQRRVQRPSPTPAAKAFSGSTHKQSEEMTIPTTQSWSLSSEGIRYAIESLSVYKFDELQKATGFFSEENKIKGSVYRASFKGDYAAVKILKGDVSGEINILKRINHFNVIRLSGFCVHKGDTYLVYEFAENDSLEDCLHSGCKKYENSVSLSWVQRVHIAHDVADALNYLHNYTSPPHVHKNLKSGNVLLDGNFRAKVSNFGLARTVEGEGGDGGFQLTRHVVGTQGYMSPEYIENGLITPKMDVFAFGVVLLELLSGREAVGGDKNGSGDKMLSVTVNQVLEGENVKEKLRGFMDPNLRDEYPLELAYSMAELAKRCVARDLNSRPQISEVFMTLSKIQSSTLDWDPSDELERSRSVSQISDSR 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco3g00869 661 Gene3D LysM domain 189 244 IPR036779 -
Phco3g00869 661 MobiDBLite consensus disorder prediction 643 661 - -
Phco3g00869 661 MobiDBLite consensus disorder prediction 309 329 - -
Phco3g00869 661 SMART LysM_2 123 170 IPR018392 -
Phco3g00869 661 SMART LysM_2 190 234 IPR018392 -
Phco3g00869 661 CDD LysM 190 226 IPR018392 -
Phco3g00869 661 Gene3D Phosphorylase Kinase; domain 1 324 424 - -
Phco3g00869 661 ProSiteProfiles LysM domain profile. 189 233 IPR018392 -
Phco3g00869 661 Pfam Protein kinase domain 389 628 IPR000719 GO:0004672|GO:0005524|GO:0006468
Phco3g00869 661 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 10 645 - -
Phco3g00869 661 SUPERFAMILY Protein kinase-like (PK-like) 335 629 IPR011009 -
Phco3g00869 661 SUPERFAMILY LysM domain 189 234 IPR036779 -
Phco3g00869 661 MobiDBLite consensus disorder prediction 641 661 - -
Phco3g00869 661 Gene3D Transferase(Phosphotransferase) domain 1 426 653 - -
Phco3g00869 661 MobiDBLite consensus disorder prediction 239 264 - -
Phco3g00869 661 MobiDBLite consensus disorder prediction 305 329 - -
Phco3g00869 661 Pfam LysM domain 191 234 IPR018392 -
Phco3g00869 661 Pfam LysM domain 129 170 IPR018392 -
Phco3g00869 661 FunFam PTI1-like tyrosine-protein kinase 3 425 646 - -
Phco3g00869 661 ProSiteProfiles Protein kinase domain profile. 340 640 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco3g00869 Phco-Chr3 7337715 7339700 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Phco3g00869 Pkinase 4.4e-36 CL0016